miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5934 3' -65.3 NC_001806.1 + 30269 0.75 0.140134
Target:  5'- cCGGCCCCCGcgccccggccCCCGGGGcggagccggccgcccGCCCCGCgGAc -3'
miRNA:   3'- -GUCGGGGGU----------GGGUCCC---------------UGGGGUGgCU- -5'
5934 3' -65.3 NC_001806.1 + 30724 0.75 0.132194
Target:  5'- uCGGCCCCgACCCccgcGGGGGCCgccucuuccgCCGCCGGg -3'
miRNA:   3'- -GUCGGGGgUGGG----UCCCUGG----------GGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 31768 0.67 0.408315
Target:  5'- gAGCCgCgGCCCGGGcuGCCugaCCACCGAu -3'
miRNA:   3'- gUCGGgGgUGGGUCCc-UGG---GGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 32956 0.72 0.222893
Target:  5'- gGGCCCCgGgCCGGGG-CCCCuuggguccGCCGGg -3'
miRNA:   3'- gUCGGGGgUgGGUCCCuGGGG--------UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 33125 0.7 0.291943
Target:  5'- gGGCCCggaCCGCCgcgguCGGGGGCCCCucgucCCGGg -3'
miRNA:   3'- gUCGGG---GGUGG-----GUCCCUGGGGu----GGCU- -5'
5934 3' -65.3 NC_001806.1 + 38699 0.67 0.450174
Target:  5'- -cGCCCCCcgggCGGGGcCCCCGCCc- -3'
miRNA:   3'- guCGGGGGugg-GUCCCuGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 40502 0.71 0.242567
Target:  5'- aUAGUCCCCACCCAGgcugugcaggacacGGAUCUC-CCGGg -3'
miRNA:   3'- -GUCGGGGGUGGGUC--------------CCUGGGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 41214 0.66 0.467567
Target:  5'- gAGCCCCgCgccuaaagugGCCCAGGG-CCUCguggaGCCGGc -3'
miRNA:   3'- gUCGGGG-G----------UGGGUCCCuGGGG-----UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 41416 0.67 0.414029
Target:  5'- gAGCCgCCUGCCCagcgcgccguggucGGGGugCgCCGCCGc -3'
miRNA:   3'- gUCGG-GGGUGGG--------------UCCCugG-GGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 41983 0.68 0.395443
Target:  5'- aCGGCCUCCcuGCCCAGGGGCgagggcugcuccgugCUgGCCGc -3'
miRNA:   3'- -GUCGGGGG--UGGGUCCCUG---------------GGgUGGCu -5'
5934 3' -65.3 NC_001806.1 + 42389 0.66 0.476393
Target:  5'- uGGCCCCCGcgcccCCCAGacgcuGGGCCUgaagcagguagUACCGAg -3'
miRNA:   3'- gUCGGGGGU-----GGGUC-----CCUGGG-----------GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 44282 0.66 0.467567
Target:  5'- -cGCCCCCGCaaCCAGGagcugggcGACCUuggCGCCGGc -3'
miRNA:   3'- guCGGGGGUG--GGUCC--------CUGGG---GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 46183 0.68 0.383615
Target:  5'- gGGCCCCCcgaACCCAGcGGGuggcgacuaaggcCCCCGCgGc -3'
miRNA:   3'- gUCGGGGG---UGGGUC-CCU-------------GGGGUGgCu -5'
5934 3' -65.3 NC_001806.1 + 46364 0.68 0.392266
Target:  5'- -cGCCCCCccaaaccccgacGCgCCAuGGACCCC-CCGGg -3'
miRNA:   3'- guCGGGGG------------UG-GGUcCCUGGGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 47194 0.66 0.494286
Target:  5'- -cGCCCCCccGCCCggccGGGGgucccaaaaacACCCCGgCGGc -3'
miRNA:   3'- guCGGGGG--UGGG----UCCC-----------UGGGGUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 48368 0.67 0.449313
Target:  5'- aCGGCCCCCccgaccgaugucaGCCUGGGGgacgaGCUCCACUu- -3'
miRNA:   3'- -GUCGGGGG-------------UGGGUCCC-----UGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 49729 0.67 0.450174
Target:  5'- -cGCCCUaGCCCuGGGGCauCCgGCCGGg -3'
miRNA:   3'- guCGGGGgUGGGuCCCUG--GGgUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 50950 0.74 0.152866
Target:  5'- gGGCCCCCGugUCCGGGacggcaGACCCCGCCu- -3'
miRNA:   3'- gUCGGGGGU--GGGUCC------CUGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 51377 0.69 0.325308
Target:  5'- -uGCuCCCCACCCcggAGGGGCUCCuuagcgcgGCCGu -3'
miRNA:   3'- guCG-GGGGUGGG---UCCCUGGGG--------UGGCu -5'
5934 3' -65.3 NC_001806.1 + 52656 0.71 0.244224
Target:  5'- gAGCCCCCGCCCcucccccGACCUCGCCu- -3'
miRNA:   3'- gUCGGGGGUGGGucc----CUGGGGUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.