miRNA display CGI


Results 81 - 100 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5934 3' -65.3 NC_001806.1 + 52740 0.67 0.441612
Target:  5'- gGGCCCCCGCuuCCGGaugcgaacGACCCgguCGCCGAg -3'
miRNA:   3'- gUCGGGGGUG--GGUCc-------CUGGG---GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 52831 0.66 0.52168
Target:  5'- -uGCCCCCgcgccucccgGCCCGuaacgucgcGGGACCCgacaggcgacCGCCGGc -3'
miRNA:   3'- guCGGGGG----------UGGGU---------CCCUGGG----------GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 56045 0.66 0.52168
Target:  5'- -uGUCCCCuuCCGGaauuuauacccGGGCCCCAuCCGGg -3'
miRNA:   3'- guCGGGGGugGGUC-----------CCUGGGGU-GGCU- -5'
5934 3' -65.3 NC_001806.1 + 56264 0.66 0.491582
Target:  5'- gGGCCCCgucCCCGGGGuCCUuccugugcaggcgaCGCCGGa -3'
miRNA:   3'- gUCGGGGgu-GGGUCCCuGGG--------------GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 56908 0.67 0.458827
Target:  5'- uCAGCCCgCCGacgaccaucCCCAGGGugCCgA-CGAa -3'
miRNA:   3'- -GUCGGG-GGU---------GGGUCCCugGGgUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 57301 0.72 0.207953
Target:  5'- --aCCCCCGCgCCAGGGcCCCCACg-- -3'
miRNA:   3'- gucGGGGGUG-GGUCCCuGGGGUGgcu -5'
5934 3' -65.3 NC_001806.1 + 57963 0.69 0.318414
Target:  5'- aGGCCCCCgccucucccGCCCGGGcaGCgCCAUCGAg -3'
miRNA:   3'- gUCGGGGG---------UGGGUCCc-UGgGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 59004 0.68 0.361424
Target:  5'- -cGCCCCCuccuccggcuGCCCgAGGGACgCguCCGAc -3'
miRNA:   3'- guCGGGGG----------UGGG-UCCCUGgGguGGCU- -5'
5934 3' -65.3 NC_001806.1 + 59614 0.66 0.476393
Target:  5'- aAGCgCCgggGCCUuGGGGCCCCgGCCGGg -3'
miRNA:   3'- gUCGgGGg--UGGGuCCCUGGGG-UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 60402 0.69 0.342302
Target:  5'- uGGaCCCCCccgagucgcucucagACCCGGcGGGCCauCCGCCGGg -3'
miRNA:   3'- gUC-GGGGG---------------UGGGUC-CCUGG--GGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 61525 0.66 0.52168
Target:  5'- aCAGCCCgUACacgcggucgggCGGGGGCuuggcgugCCCGCCGAg -3'
miRNA:   3'- -GUCGGGgGUGg----------GUCCCUG--------GGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 65305 0.66 0.4853
Target:  5'- gGGCCCCCaaggGCCUcgguGGGGACgUCgGCCGu -3'
miRNA:   3'- gUCGGGGG----UGGG----UCCCUG-GGgUGGCu -5'
5934 3' -65.3 NC_001806.1 + 65461 0.73 0.184976
Target:  5'- gCGGCCCCCGgguCCUGGGGGCgCCCGCg-- -3'
miRNA:   3'- -GUCGGGGGU---GGGUCCCUG-GGGUGgcu -5'
5934 3' -65.3 NC_001806.1 + 65653 0.66 0.467567
Target:  5'- gCGGCCUCCcCCUGGGuGGCUgCGCUGGg -3'
miRNA:   3'- -GUCGGGGGuGGGUCC-CUGGgGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 65686 0.66 0.4853
Target:  5'- cCGGCCUCCuguccCCCAaccGGGGCCCgCGCuuCGAc -3'
miRNA:   3'- -GUCGGGGGu----GGGU---CCCUGGG-GUG--GCU- -5'
5934 3' -65.3 NC_001806.1 + 67147 0.66 0.51248
Target:  5'- -cGCCCCgAcCCCAGGGcggucGCCuCCAUCa- -3'
miRNA:   3'- guCGGGGgU-GGGUCCC-----UGG-GGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 67500 0.68 0.376632
Target:  5'- gGGUCCCgACCCccuGGGGAgCCCuggGCCGu -3'
miRNA:   3'- gUCGGGGgUGGG---UCCCUgGGG---UGGCu -5'
5934 3' -65.3 NC_001806.1 + 69229 0.66 0.494286
Target:  5'- cCAGCCUgCugcaGCUCGGGGAgcagccCUCCGCCGGc -3'
miRNA:   3'- -GUCGGGgG----UGGGUCCCU------GGGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 69425 0.67 0.450174
Target:  5'- -cGUCCCCGCgC--GGACgCCCACCGGc -3'
miRNA:   3'- guCGGGGGUGgGucCCUG-GGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 70276 0.67 0.416492
Target:  5'- gCAGCCCCC-CCC----GCCCC-CCGAg -3'
miRNA:   3'- -GUCGGGGGuGGGucccUGGGGuGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.