miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5934 3' -65.3 NC_001806.1 + 131508 0.7 0.2856
Target:  5'- uGGCCCCCggACCCGGGccguuUCCCACCc- -3'
miRNA:   3'- gUCGGGGG--UGGGUCCcu---GGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 128062 0.7 0.2856
Target:  5'- aCGGCCCCCAggUGGGGG-CCCACCa- -3'
miRNA:   3'- -GUCGGGGGUggGUCCCUgGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 123807 0.66 0.52168
Target:  5'- -cGCUCCU-CCCAcGGGucCCgCCACCGAu -3'
miRNA:   3'- guCGGGGGuGGGU-CCCu-GG-GGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 123775 0.66 0.4853
Target:  5'- gCGGCCCCUcucUCCA-GGACgCCGCCGu -3'
miRNA:   3'- -GUCGGGGGu--GGGUcCCUGgGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 121546 0.73 0.200344
Target:  5'- uGGCCaggaucaccaaCCACCCGGGGggcugcgaguccugcGCCCCGCCGc -3'
miRNA:   3'- gUCGGg----------GGUGGGUCCC---------------UGGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 121296 0.68 0.384396
Target:  5'- gCGGCCaCCCcCCCGGaGGAaaCCCCcgacccaaccACCGAa -3'
miRNA:   3'- -GUCGG-GGGuGGGUC-CCU--GGGG----------UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 120866 0.72 0.21631
Target:  5'- gCGGCCCCUGgcgccgccugguccCCCGGGGACCUUGCCc- -3'
miRNA:   3'- -GUCGGGGGU--------------GGGUCCCUGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 120805 0.74 0.168236
Target:  5'- uGGCCCCCGCCUcuGGGGuuugcccuccCCCCGCCc- -3'
miRNA:   3'- gUCGGGGGUGGG--UCCCu---------GGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 119281 0.69 0.318414
Target:  5'- cCGG-CCCCACgCGGGGGCgCCCGCaGAc -3'
miRNA:   3'- -GUCgGGGGUGgGUCCCUG-GGGUGgCU- -5'
5934 3' -65.3 NC_001806.1 + 115862 0.74 0.156585
Target:  5'- gGGCCCCauaaaACCCAagccGGGACUCCGCgGAc -3'
miRNA:   3'- gUCGGGGg----UGGGU----CCCUGGGGUGgCU- -5'
5934 3' -65.3 NC_001806.1 + 115813 0.66 0.476393
Target:  5'- cUAGCCCCgCcCCCuuuGuCCCCGCCGAc -3'
miRNA:   3'- -GUCGGGG-GuGGGuccCuGGGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 115394 0.74 0.160385
Target:  5'- gGGCCUaCCACCuCAacGGGGCCUCGCCGGu -3'
miRNA:   3'- gUCGGG-GGUGG-GU--CCCUGGGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 115218 0.73 0.180658
Target:  5'- cCGGCCCugcaaCC-CCCGGGGACgCgCCGCCGGg -3'
miRNA:   3'- -GUCGGG-----GGuGGGUCCCUG-G-GGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 114160 0.68 0.368975
Target:  5'- -cGCCCCCGgCgAGGaGuGCCCCAgCGAc -3'
miRNA:   3'- guCGGGGGUgGgUCC-C-UGGGGUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 113094 0.67 0.424769
Target:  5'- gCGGCCCCgGCC----GGCCCCGCCGc -3'
miRNA:   3'- -GUCGGGGgUGGguccCUGGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 112241 0.71 0.238194
Target:  5'- aCGGCCgCCUggccaccagggugGCCCGGGcGACCCUggucGCCGAg -3'
miRNA:   3'- -GUCGG-GGG-------------UGGGUCC-CUGGGG----UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 109508 0.66 0.52168
Target:  5'- aGGCCgCUCA-CCAGGGcCUCCAgCGAg -3'
miRNA:   3'- gUCGG-GGGUgGGUCCCuGGGGUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 109380 0.67 0.424769
Target:  5'- -cGCCCgCGCCCcccGACCCCGCCc- -3'
miRNA:   3'- guCGGGgGUGGGuccCUGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 109064 0.73 0.172289
Target:  5'- gCGGCCCCgauaaaCGCCCGcGGGGcCCCCGCgGAg -3'
miRNA:   3'- -GUCGGGG------GUGGGU-CCCU-GGGGUGgCU- -5'
5934 3' -65.3 NC_001806.1 + 106717 0.71 0.234958
Target:  5'- gCGGCCCCCGguaucgggucuuuguCCUAGGGuCCCUgacgcggGCCGAc -3'
miRNA:   3'- -GUCGGGGGU---------------GGGUCCCuGGGG-------UGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.