miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5934 3' -65.3 NC_001806.1 + 106636 0.68 0.376632
Target:  5'- uGGUCCCCgcgggccagacGCUagaucggguCGGGGACCCCGCgGAc -3'
miRNA:   3'- gUCGGGGG-----------UGG---------GUCCCUGGGGUGgCU- -5'
5934 3' -65.3 NC_001806.1 + 104519 0.66 0.51248
Target:  5'- aCGGUCCCCACgggaUGGGGAaaaCCaCCACCa- -3'
miRNA:   3'- -GUCGGGGGUGg---GUCCCU---GG-GGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 102977 0.68 0.384396
Target:  5'- -cGCCCCCACCCGccGGcucauCCCCGCgCGc -3'
miRNA:   3'- guCGGGGGUGGGU--CCcu---GGGGUG-GCu -5'
5934 3' -65.3 NC_001806.1 + 102949 0.66 0.4853
Target:  5'- aCGGCCag-ACCCGGGGgcGCCCCcCCGu -3'
miRNA:   3'- -GUCGGgggUGGGUCCC--UGGGGuGGCu -5'
5934 3' -65.3 NC_001806.1 + 102051 0.74 0.152499
Target:  5'- uGGCCCCCgagucggACCCGGaGGCCCCACgGGc -3'
miRNA:   3'- gUCGGGGG-------UGGGUCcCUGGGGUGgCU- -5'
5934 3' -65.3 NC_001806.1 + 100259 0.69 0.311631
Target:  5'- aGGCCCauaGgCCAcGGACCCCGCCGc -3'
miRNA:   3'- gUCGGGgg-UgGGUcCCUGGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 100082 0.66 0.467567
Target:  5'- -cGaCCCCCGgacCCCAGGGuCUCCcgcgGCCGGc -3'
miRNA:   3'- guC-GGGGGU---GGGUCCCuGGGG----UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 99797 0.71 0.243671
Target:  5'- cCGGuCCCCCACCUgAGGGcgauaguGCgCCACCGGc -3'
miRNA:   3'- -GUC-GGGGGUGGG-UCCC-------UGgGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 98135 0.66 0.494286
Target:  5'- uCAGCUCgCgGCCCGGGGccugcuacagccGCCCC-CUGGu -3'
miRNA:   3'- -GUCGGG-GgUGGGUCCC------------UGGGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 97808 0.69 0.332312
Target:  5'- -cGCCCCCgccGCCCGGGG-CCagCGCCa- -3'
miRNA:   3'- guCGGGGG---UGGGUCCCuGGg-GUGGcu -5'
5934 3' -65.3 NC_001806.1 + 96551 0.73 0.198479
Target:  5'- -cGCCCCC-CCaacgGGGGACCCgaaACCGAa -3'
miRNA:   3'- guCGGGGGuGGg---UCCCUGGGg--UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 96492 0.69 0.325308
Target:  5'- gCGGCCgCgACCCaggcggcgaacGGGGGCCCUGCCa- -3'
miRNA:   3'- -GUCGGgGgUGGG-----------UCCCUGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 96383 0.72 0.207953
Target:  5'- -cGCCCCCGCgCGGGGGCgCCGgUGGu -3'
miRNA:   3'- guCGGGGGUGgGUCCCUGgGGUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 95336 0.67 0.424769
Target:  5'- gGGCCCCgACgacgaCGGGGACCgugUCGCCGu -3'
miRNA:   3'- gUCGGGGgUGg----GUCCCUGG---GGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 93890 0.7 0.287491
Target:  5'- gGGCCCgcgggaggCCGCCCcgaagagGGGGACCCCggggcucagccagacGCCGGg -3'
miRNA:   3'- gUCGGG--------GGUGGG-------UCCCUGGGG---------------UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 93579 0.69 0.325308
Target:  5'- -cGCCgUUcggcgGCCCGGGGGCCCCgggACCGGc -3'
miRNA:   3'- guCGGgGG-----UGGGUCCCUGGGG---UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 92341 0.69 0.311631
Target:  5'- cCAGCCUaacggCCGgCCAGacGGcCCCCGCCGAg -3'
miRNA:   3'- -GUCGGG-----GGUgGGUC--CCuGGGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 92167 0.66 0.493384
Target:  5'- uGGCCCUgagucagUGCCaCGGGGugUUCGCCGGg -3'
miRNA:   3'- gUCGGGG-------GUGG-GUCCCugGGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 90970 0.69 0.339425
Target:  5'- aCGGCCUucgaagCCAgCCAGGGuaagACCCCGCgGGg -3'
miRNA:   3'- -GUCGGG------GGUgGGUCCC----UGGGGUGgCU- -5'
5934 3' -65.3 NC_001806.1 + 89887 0.67 0.424769
Target:  5'- -uGCCUCU-CgCAGGGACCCCgcguuGCCGGc -3'
miRNA:   3'- guCGGGGGuGgGUCCCUGGGG-----UGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.