miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5934 3' -65.3 NC_001806.1 + 87604 0.66 0.468446
Target:  5'- aCAGCUggCCCACCagCAGGGAauccuguaugcaguaCUCGCCGAu -3'
miRNA:   3'- -GUCGG--GGGUGG--GUCCCUg--------------GGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 85304 0.67 0.416492
Target:  5'- -cGCCCCCcUCCA-GGACCUCuugGCCGGg -3'
miRNA:   3'- guCGGGGGuGGGUcCCUGGGG---UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 84995 0.7 0.2856
Target:  5'- -cGCCCUCGCCCAGacGCCCU-CCGAg -3'
miRNA:   3'- guCGGGGGUGGGUCccUGGGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 84824 0.66 0.4853
Target:  5'- gCGGCUCCgGCCC-GGG-CCCUAUCa- -3'
miRNA:   3'- -GUCGGGGgUGGGuCCCuGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 83766 0.67 0.424769
Target:  5'- gCAGUCUgCCACCC-GGGcCCUCAUCGGa -3'
miRNA:   3'- -GUCGGG-GGUGGGuCCCuGGGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 83707 0.66 0.494286
Target:  5'- aAGCCCUCGCCCuccccGGGAgC-CGCCa- -3'
miRNA:   3'- gUCGGGGGUGGGu----CCCUgGgGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 80569 0.68 0.364432
Target:  5'- cCAGCCCCaaaacgggcauguagCACCCGGGGAguaUCCGgCGGu -3'
miRNA:   3'- -GUCGGGG---------------GUGGGUCCCUg--GGGUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 80086 0.81 0.055149
Target:  5'- --cCCUUCACCCuGGGACCCCGCCGAc -3'
miRNA:   3'- gucGGGGGUGGGuCCCUGGGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 79402 0.69 0.330902
Target:  5'- gCGGCCCCgCGCCCcuccuugccccGGACCCCcuuucgcccaccGCCGAu -3'
miRNA:   3'- -GUCGGGG-GUGGGuc---------CCUGGGG------------UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 78926 0.78 0.084714
Target:  5'- gCGGCCCCuCGCCCGGGG--CCCGCCGu -3'
miRNA:   3'- -GUCGGGG-GUGGGUCCCugGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 78231 0.67 0.408315
Target:  5'- aGGCCCuCCgACCCGGGG-CCUCAuguUCGGc -3'
miRNA:   3'- gUCGGG-GG-UGGGUCCCuGGGGU---GGCU- -5'
5934 3' -65.3 NC_001806.1 + 77443 0.72 0.203168
Target:  5'- -cGCCCgCGCCCGGGcGuccGCCCCACCc- -3'
miRNA:   3'- guCGGGgGUGGGUCC-C---UGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 74885 0.69 0.332312
Target:  5'- gGGCCuCCCugCCGGcgggcuggucGGACCUCcCCGAg -3'
miRNA:   3'- gUCGG-GGGugGGUC----------CCUGGGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 74019 0.66 0.476393
Target:  5'- -cGCgCCCACCCccccuGGGCCCCgagGCCGu -3'
miRNA:   3'- guCGgGGGUGGGuc---CCUGGGG---UGGCu -5'
5934 3' -65.3 NC_001806.1 + 73987 0.72 0.222893
Target:  5'- -cGCCCCgGCCgGGGcGGCCCCGCaGGg -3'
miRNA:   3'- guCGGGGgUGGgUCC-CUGGGGUGgCU- -5'
5934 3' -65.3 NC_001806.1 + 73438 0.67 0.450174
Target:  5'- gGGCCCggacgcaCACCCAGGccgggguggccGGCCCgGCCGc -3'
miRNA:   3'- gUCGGGg------GUGGGUCC-----------CUGGGgUGGCu -5'
5934 3' -65.3 NC_001806.1 + 73098 0.67 0.450174
Target:  5'- uCGGCaCCCCccgACCCGGccGGGCCgCCggucGCCGAg -3'
miRNA:   3'- -GUCG-GGGG---UGGGUC--CCUGG-GG----UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 72930 0.66 0.494286
Target:  5'- -cGCCgCCgACCCAccuGGACUCCGCCu- -3'
miRNA:   3'- guCGG-GGgUGGGUc--CCUGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 72729 0.72 0.228073
Target:  5'- gGGUaCCCCACCCAcGGAUCCCcccuccGCCGAc -3'
miRNA:   3'- gUCG-GGGGUGGGUcCCUGGGG------UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 72540 0.72 0.209894
Target:  5'- gGGCCCCCgggaggggguaggggGCCCGGGGccACaCCCGCCc- -3'
miRNA:   3'- gUCGGGGG---------------UGGGUCCC--UG-GGGUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.