miRNA display CGI


Results 81 - 100 of 184 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5934 3' -65.3 NC_001806.1 + 100082 0.66 0.467567
Target:  5'- -cGaCCCCCGgacCCCAGGGuCUCCcgcgGCCGGc -3'
miRNA:   3'- guC-GGGGGU---GGGUCCCuGGGG----UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 65653 0.66 0.467567
Target:  5'- gCGGCCUCCcCCUGGGuGGCUgCGCUGGg -3'
miRNA:   3'- -GUCGGGGGuGGGUCC-CUGGgGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 41214 0.66 0.467567
Target:  5'- gAGCCCCgCgccuaaagugGCCCAGGG-CCUCguggaGCCGGc -3'
miRNA:   3'- gUCGGGG-G----------UGGGUCCCuGGGG-----UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 3366 0.67 0.458827
Target:  5'- gGGCCCCggccaGCCCcGGGACggCCGCCa- -3'
miRNA:   3'- gUCGGGGg----UGGGuCCCUGg-GGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 56908 0.67 0.458827
Target:  5'- uCAGCCCgCCGacgaccaucCCCAGGGugCCgA-CGAa -3'
miRNA:   3'- -GUCGGG-GGU---------GGGUCCCugGGgUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 69425 0.67 0.450174
Target:  5'- -cGUCCCCGCgC--GGACgCCCACCGGc -3'
miRNA:   3'- guCGGGGGUGgGucCCUG-GGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 49729 0.67 0.450174
Target:  5'- -cGCCCUaGCCCuGGGGCauCCgGCCGGg -3'
miRNA:   3'- guCGGGGgUGGGuCCCUG--GGgUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 42389 0.66 0.476393
Target:  5'- uGGCCCCCGcgcccCCCAGacgcuGGGCCUgaagcagguagUACCGAg -3'
miRNA:   3'- gUCGGGGGU-----GGGUC-----CCUGGG-----------GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 59614 0.66 0.476393
Target:  5'- aAGCgCCgggGCCUuGGGGCCCCgGCCGGg -3'
miRNA:   3'- gUCGgGGg--UGGGuCCCUGGGG-UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 115813 0.66 0.476393
Target:  5'- cUAGCCCCgCcCCCuuuGuCCCCGCCGAc -3'
miRNA:   3'- -GUCGGGG-GuGGGuccCuGGGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 21300 0.66 0.4853
Target:  5'- gGGCCCCCGCggCGGGcACCgaCGCCGGc -3'
miRNA:   3'- gUCGGGGGUGg-GUCCcUGGg-GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 5821 0.66 0.4853
Target:  5'- gAGCCCCgcgCGCCCGuuggccguccccGGG-CCCC-CCGGu -3'
miRNA:   3'- gUCGGGG---GUGGGU------------CCCuGGGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 123775 0.66 0.4853
Target:  5'- gCGGCCCCUcucUCCA-GGACgCCGCCGu -3'
miRNA:   3'- -GUCGGGGGu--GGGUcCCUGgGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 84824 0.66 0.4853
Target:  5'- gCGGCUCCgGCCC-GGG-CCCUAUCa- -3'
miRNA:   3'- -GUCGGGGgUGGGuCCCuGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 65686 0.66 0.4853
Target:  5'- cCGGCCUCCuguccCCCAaccGGGGCCCgCGCuuCGAc -3'
miRNA:   3'- -GUCGGGGGu----GGGU---CCCUGGG-GUG--GCU- -5'
5934 3' -65.3 NC_001806.1 + 65305 0.66 0.4853
Target:  5'- gGGCCCCCaaggGCCUcgguGGGGACgUCgGCCGu -3'
miRNA:   3'- gUCGGGGG----UGGG----UCCCUG-GGgUGGCu -5'
5934 3' -65.3 NC_001806.1 + 74019 0.66 0.476393
Target:  5'- -cGCgCCCACCCccccuGGGCCCCgagGCCGu -3'
miRNA:   3'- guCGgGGGUGGGuc---CCUGGGG---UGGCu -5'
5934 3' -65.3 NC_001806.1 + 26400 0.66 0.476393
Target:  5'- gCGGCCCCCGccgccCCCGGccgcccGGGCCCacgggCGCCGu -3'
miRNA:   3'- -GUCGGGGGU-----GGGUC------CCUGGG-----GUGGCu -5'
5934 3' -65.3 NC_001806.1 + 7402 0.66 0.476393
Target:  5'- gAGCCCCgGucucCCCGGGaGCCCCGgucuccCCGGg -3'
miRNA:   3'- gUCGGGGgU----GGGUCCcUGGGGU------GGCU- -5'
5934 3' -65.3 NC_001806.1 + 5579 0.66 0.476393
Target:  5'- -cGCCCCgacgccggCACgCCGGGGGCCCgugGCCGc -3'
miRNA:   3'- guCGGGG--------GUG-GGUCCCUGGGg--UGGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.