miRNA display CGI


Results 101 - 120 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5934 3' -65.3 NC_001806.1 + 144319 0.67 0.449313
Target:  5'- --cCCCCCGCCCGuguGGGuauccggccccccGCCCCgcGCCGGu -3'
miRNA:   3'- gucGGGGGUGGGU---CCC-------------UGGGG--UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 48368 0.67 0.449313
Target:  5'- aCGGCCCCCccgaccgaugucaGCCUGGGGgacgaGCUCCACUu- -3'
miRNA:   3'- -GUCGGGGG-------------UGGGUCCC-----UGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 28681 0.67 0.445026
Target:  5'- gAGCCgCCCGCcauauuugggggacgCCGuGGGACCCCcgacuCCGGu -3'
miRNA:   3'- gUCGG-GGGUG---------------GGU-CCCUGGGGu----GGCU- -5'
5934 3' -65.3 NC_001806.1 + 52740 0.67 0.441612
Target:  5'- gGGCCCCCGCuuCCGGaugcgaacGACCCgguCGCCGAg -3'
miRNA:   3'- gUCGGGGGUG--GGUCc-------CUGGG---GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 27071 0.67 0.433142
Target:  5'- aGGCCCgUGCCCGGGcccuGGCCCgcggaGCCGGc -3'
miRNA:   3'- gUCGGGgGUGGGUCC----CUGGGg----UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 3366 0.67 0.458827
Target:  5'- gGGCCCCggccaGCCCcGGGACggCCGCCa- -3'
miRNA:   3'- gUCGGGGg----UGGGuCCCUGg-GGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 41214 0.66 0.467567
Target:  5'- gAGCCCCgCgccuaaagugGCCCAGGG-CCUCguggaGCCGGc -3'
miRNA:   3'- gUCGGGG-G----------UGGGUCCCuGGGG-----UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 65305 0.66 0.4853
Target:  5'- gGGCCCCCaaggGCCUcgguGGGGACgUCgGCCGu -3'
miRNA:   3'- gUCGGGGG----UGGG----UCCCUG-GGgUGGCu -5'
5934 3' -65.3 NC_001806.1 + 74019 0.66 0.476393
Target:  5'- -cGCgCCCACCCccccuGGGCCCCgagGCCGu -3'
miRNA:   3'- guCGgGGGUGGGuc---CCUGGGG---UGGCu -5'
5934 3' -65.3 NC_001806.1 + 26400 0.66 0.476393
Target:  5'- gCGGCCCCCGccgccCCCGGccgcccGGGCCCacgggCGCCGu -3'
miRNA:   3'- -GUCGGGGGU-----GGGUC------CCUGGG-----GUGGCu -5'
5934 3' -65.3 NC_001806.1 + 7402 0.66 0.476393
Target:  5'- gAGCCCCgGucucCCCGGGaGCCCCGgucuccCCGGg -3'
miRNA:   3'- gUCGGGGgU----GGGUCCcUGGGGU------GGCU- -5'
5934 3' -65.3 NC_001806.1 + 5579 0.66 0.476393
Target:  5'- -cGCCCCgacgccggCACgCCGGGGGCCCgugGCCGc -3'
miRNA:   3'- guCGGGG--------GUG-GGUCCCUGGGg--UGGCu -5'
5934 3' -65.3 NC_001806.1 + 115813 0.66 0.476393
Target:  5'- cUAGCCCCgCcCCCuuuGuCCCCGCCGAc -3'
miRNA:   3'- -GUCGGGG-GuGGGuccCuGGGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 59614 0.66 0.476393
Target:  5'- aAGCgCCgggGCCUuGGGGCCCCgGCCGGg -3'
miRNA:   3'- gUCGgGGg--UGGGuCCCUGGGG-UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 42389 0.66 0.476393
Target:  5'- uGGCCCCCGcgcccCCCAGacgcuGGGCCUgaagcagguagUACCGAg -3'
miRNA:   3'- gUCGGGGGU-----GGGUC-----CCUGGG-----------GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 7337 0.66 0.476393
Target:  5'- gAGCUCCCAgagacCCCAGGGuaccgcgugACCCCAggGAu -3'
miRNA:   3'- gUCGGGGGU-----GGGUCCC---------UGGGGUggCU- -5'
5934 3' -65.3 NC_001806.1 + 87604 0.66 0.468446
Target:  5'- aCAGCUggCCCACCagCAGGGAauccuguaugcaguaCUCGCCGAu -3'
miRNA:   3'- -GUCGG--GGGUGG--GUCCCUg--------------GGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 44282 0.66 0.467567
Target:  5'- -cGCCCCCGCaaCCAGGagcugggcGACCUuggCGCCGGc -3'
miRNA:   3'- guCGGGGGUG--GGUCC--------CUGGG---GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 100082 0.66 0.467567
Target:  5'- -cGaCCCCCGgacCCCAGGGuCUCCcgcgGCCGGc -3'
miRNA:   3'- guC-GGGGGU---GGGUCCCuGGGG----UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 65653 0.66 0.467567
Target:  5'- gCGGCCUCCcCCUGGGuGGCUgCGCUGGg -3'
miRNA:   3'- -GUCGGGGGuGGGUCC-CUGGgGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.