Results 121 - 140 of 184 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5934 | 3' | -65.3 | NC_001806.1 | + | 85304 | 0.67 | 0.416492 |
Target: 5'- -cGCCCCCcUCCA-GGACCUCuugGCCGGg -3' miRNA: 3'- guCGGGGGuGGGUcCCUGGGG---UGGCU- -5' |
|||||||
5934 | 3' | -65.3 | NC_001806.1 | + | 4128 | 0.67 | 0.416492 |
Target: 5'- -cGCCCCCcagagGCCCGGGcGGCUgucgcccaggCCGCCGu -3' miRNA: 3'- guCGGGGG-----UGGGUCC-CUGG----------GGUGGCu -5' |
|||||||
5934 | 3' | -65.3 | NC_001806.1 | + | 26628 | 0.67 | 0.450174 |
Target: 5'- aCAGCCCCCcgcccgagccgGCgCCAGaGGCCCgGCCc- -3' miRNA: 3'- -GUCGGGGG-----------UG-GGUCcCUGGGgUGGcu -5' |
|||||||
5934 | 3' | -65.3 | NC_001806.1 | + | 38699 | 0.67 | 0.450174 |
Target: 5'- -cGCCCCCcgggCGGGGcCCCCGCCc- -3' miRNA: 3'- guCGGGGGugg-GUCCCuGGGGUGGcu -5' |
|||||||
5934 | 3' | -65.3 | NC_001806.1 | + | 73098 | 0.67 | 0.450174 |
Target: 5'- uCGGCaCCCCccgACCCGGccGGGCCgCCggucGCCGAg -3' miRNA: 3'- -GUCG-GGGG---UGGGUC--CCUGG-GG----UGGCU- -5' |
|||||||
5934 | 3' | -65.3 | NC_001806.1 | + | 115813 | 0.66 | 0.476393 |
Target: 5'- cUAGCCCCgCcCCCuuuGuCCCCGCCGAc -3' miRNA: 3'- -GUCGGGG-GuGGGuccCuGGGGUGGCU- -5' |
|||||||
5934 | 3' | -65.3 | NC_001806.1 | + | 59614 | 0.66 | 0.476393 |
Target: 5'- aAGCgCCgggGCCUuGGGGCCCCgGCCGGg -3' miRNA: 3'- gUCGgGGg--UGGGuCCCUGGGG-UGGCU- -5' |
|||||||
5934 | 3' | -65.3 | NC_001806.1 | + | 42389 | 0.66 | 0.476393 |
Target: 5'- uGGCCCCCGcgcccCCCAGacgcuGGGCCUgaagcagguagUACCGAg -3' miRNA: 3'- gUCGGGGGU-----GGGUC-----CCUGGG-----------GUGGCU- -5' |
|||||||
5934 | 3' | -65.3 | NC_001806.1 | + | 7337 | 0.66 | 0.476393 |
Target: 5'- gAGCUCCCAgagacCCCAGGGuaccgcgugACCCCAggGAu -3' miRNA: 3'- gUCGGGGGU-----GGGUCCC---------UGGGGUggCU- -5' |
|||||||
5934 | 3' | -65.3 | NC_001806.1 | + | 87604 | 0.66 | 0.468446 |
Target: 5'- aCAGCUggCCCACCagCAGGGAauccuguaugcaguaCUCGCCGAu -3' miRNA: 3'- -GUCGG--GGGUGG--GUCCCUg--------------GGGUGGCU- -5' |
|||||||
5934 | 3' | -65.3 | NC_001806.1 | + | 44282 | 0.66 | 0.467567 |
Target: 5'- -cGCCCCCGCaaCCAGGagcugggcGACCUuggCGCCGGc -3' miRNA: 3'- guCGGGGGUG--GGUCC--------CUGGG---GUGGCU- -5' |
|||||||
5934 | 3' | -65.3 | NC_001806.1 | + | 100082 | 0.66 | 0.467567 |
Target: 5'- -cGaCCCCCGgacCCCAGGGuCUCCcgcgGCCGGc -3' miRNA: 3'- guC-GGGGGU---GGGUCCCuGGGG----UGGCU- -5' |
|||||||
5934 | 3' | -65.3 | NC_001806.1 | + | 65653 | 0.66 | 0.467567 |
Target: 5'- gCGGCCUCCcCCUGGGuGGCUgCGCUGGg -3' miRNA: 3'- -GUCGGGGGuGGGUCC-CUGGgGUGGCU- -5' |
|||||||
5934 | 3' | -65.3 | NC_001806.1 | + | 41214 | 0.66 | 0.467567 |
Target: 5'- gAGCCCCgCgccuaaagugGCCCAGGG-CCUCguggaGCCGGc -3' miRNA: 3'- gUCGGGG-G----------UGGGUCCCuGGGG-----UGGCU- -5' |
|||||||
5934 | 3' | -65.3 | NC_001806.1 | + | 3366 | 0.67 | 0.458827 |
Target: 5'- gGGCCCCggccaGCCCcGGGACggCCGCCa- -3' miRNA: 3'- gUCGGGGg----UGGGuCCCUGg-GGUGGcu -5' |
|||||||
5934 | 3' | -65.3 | NC_001806.1 | + | 56908 | 0.67 | 0.458827 |
Target: 5'- uCAGCCCgCCGacgaccaucCCCAGGGugCCgA-CGAa -3' miRNA: 3'- -GUCGGG-GGU---------GGGUCCCugGGgUgGCU- -5' |
|||||||
5934 | 3' | -65.3 | NC_001806.1 | + | 69425 | 0.67 | 0.450174 |
Target: 5'- -cGUCCCCGCgC--GGACgCCCACCGGc -3' miRNA: 3'- guCGGGGGUGgGucCCUG-GGGUGGCU- -5' |
|||||||
5934 | 3' | -65.3 | NC_001806.1 | + | 49729 | 0.67 | 0.450174 |
Target: 5'- -cGCCCUaGCCCuGGGGCauCCgGCCGGg -3' miRNA: 3'- guCGGGGgUGGGuCCCUG--GGgUGGCU- -5' |
|||||||
5934 | 3' | -65.3 | NC_001806.1 | + | 7791 | 0.67 | 0.450174 |
Target: 5'- -cGCCCCCgGCUaCAGGGGCCauguugggCCGCCa- -3' miRNA: 3'- guCGGGGG-UGG-GUCCCUGG--------GGUGGcu -5' |
|||||||
5934 | 3' | -65.3 | NC_001806.1 | + | 73438 | 0.67 | 0.450174 |
Target: 5'- gGGCCCggacgcaCACCCAGGccgggguggccGGCCCgGCCGc -3' miRNA: 3'- gUCGGGg------GUGGGUCC-----------CUGGGgUGGCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home