miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5934 3' -65.3 NC_001806.1 + 72930 0.66 0.494286
Target:  5'- -cGCCgCCgACCCAccuGGACUCCGCCu- -3'
miRNA:   3'- guCGG-GGgUGGGUc--CCUGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 83707 0.66 0.494286
Target:  5'- aAGCCCUCGCCCuccccGGGAgC-CGCCa- -3'
miRNA:   3'- gUCGGGGGUGGGu----CCCUgGgGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 23558 0.66 0.493384
Target:  5'- gCAGCCCCCgggGCCCAgccacacGGcGGCgCCCGCgGc -3'
miRNA:   3'- -GUCGGGGG---UGGGU-------CC-CUG-GGGUGgCu -5'
5934 3' -65.3 NC_001806.1 + 92167 0.66 0.493384
Target:  5'- uGGCCCUgagucagUGCCaCGGGGugUUCGCCGGg -3'
miRNA:   3'- gUCGGGG-------GUGG-GUCCCugGGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 56264 0.66 0.491582
Target:  5'- gGGCCCCgucCCCGGGGuCCUuccugugcaggcgaCGCCGGa -3'
miRNA:   3'- gUCGGGGgu-GGGUCCCuGGG--------------GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 65305 0.66 0.4853
Target:  5'- gGGCCCCCaaggGCCUcgguGGGGACgUCgGCCGu -3'
miRNA:   3'- gUCGGGGG----UGGG----UCCCUG-GGgUGGCu -5'
5934 3' -65.3 NC_001806.1 + 65686 0.66 0.4853
Target:  5'- cCGGCCUCCuguccCCCAaccGGGGCCCgCGCuuCGAc -3'
miRNA:   3'- -GUCGGGGGu----GGGU---CCCUGGG-GUG--GCU- -5'
5934 3' -65.3 NC_001806.1 + 84824 0.66 0.4853
Target:  5'- gCGGCUCCgGCCC-GGG-CCCUAUCa- -3'
miRNA:   3'- -GUCGGGGgUGGGuCCCuGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 123775 0.66 0.4853
Target:  5'- gCGGCCCCUcucUCCA-GGACgCCGCCGu -3'
miRNA:   3'- -GUCGGGGGu--GGGUcCCUGgGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 5821 0.66 0.4853
Target:  5'- gAGCCCCgcgCGCCCGuuggccguccccGGG-CCCC-CCGGu -3'
miRNA:   3'- gUCGGGG---GUGGGU------------CCCuGGGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 21300 0.66 0.4853
Target:  5'- gGGCCCCCGCggCGGGcACCgaCGCCGGc -3'
miRNA:   3'- gUCGGGGGUGg-GUCCcUGGg-GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 102949 0.66 0.4853
Target:  5'- aCGGCCag-ACCCGGGGgcGCCCCcCCGu -3'
miRNA:   3'- -GUCGGgggUGGGUCCC--UGGGGuGGCu -5'
5934 3' -65.3 NC_001806.1 + 7337 0.66 0.476393
Target:  5'- gAGCUCCCAgagacCCCAGGGuaccgcgugACCCCAggGAu -3'
miRNA:   3'- gUCGGGGGU-----GGGUCCC---------UGGGGUggCU- -5'
5934 3' -65.3 NC_001806.1 + 42389 0.66 0.476393
Target:  5'- uGGCCCCCGcgcccCCCAGacgcuGGGCCUgaagcagguagUACCGAg -3'
miRNA:   3'- gUCGGGGGU-----GGGUC-----CCUGGG-----------GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 59614 0.66 0.476393
Target:  5'- aAGCgCCgggGCCUuGGGGCCCCgGCCGGg -3'
miRNA:   3'- gUCGgGGg--UGGGuCCCUGGGG-UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 115813 0.66 0.476393
Target:  5'- cUAGCCCCgCcCCCuuuGuCCCCGCCGAc -3'
miRNA:   3'- -GUCGGGG-GuGGGuccCuGGGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 5579 0.66 0.476393
Target:  5'- -cGCCCCgacgccggCACgCCGGGGGCCCgugGCCGc -3'
miRNA:   3'- guCGGGG--------GUG-GGUCCCUGGGg--UGGCu -5'
5934 3' -65.3 NC_001806.1 + 7402 0.66 0.476393
Target:  5'- gAGCCCCgGucucCCCGGGaGCCCCGgucuccCCGGg -3'
miRNA:   3'- gUCGGGGgU----GGGUCCcUGGGGU------GGCU- -5'
5934 3' -65.3 NC_001806.1 + 26400 0.66 0.476393
Target:  5'- gCGGCCCCCGccgccCCCGGccgcccGGGCCCacgggCGCCGu -3'
miRNA:   3'- -GUCGGGGGU-----GGGUC------CCUGGG-----GUGGCu -5'
5934 3' -65.3 NC_001806.1 + 74019 0.66 0.476393
Target:  5'- -cGCgCCCACCCccccuGGGCCCCgagGCCGu -3'
miRNA:   3'- guCGgGGGUGGGuc---CCUGGGG---UGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.