Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5934 | 5' | -57.9 | NC_001806.1 | + | 111222 | 0.66 | 0.849363 |
Target: 5'- --cCGGGGCc-UCGAuGUGGGUGGcGGc -3' miRNA: 3'- cuaGCUCCGcuAGCU-CACCCACC-CCu -5' |
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5934 | 5' | -57.9 | NC_001806.1 | + | 20711 | 0.66 | 0.833399 |
Target: 5'- -uUCGGGGUGGgcccgcCGGGgGGGcGGGGGg -3' miRNA: 3'- cuAGCUCCGCUa-----GCUCaCCCaCCCCU- -5' |
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5934 | 5' | -57.9 | NC_001806.1 | + | 34384 | 0.66 | 0.825149 |
Target: 5'- --cCGAGGUGggUGGGUGGGcGGcGGu -3' miRNA: 3'- cuaGCUCCGCuaGCUCACCCaCC-CCu -5' |
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5934 | 5' | -57.9 | NC_001806.1 | + | 42320 | 0.67 | 0.77236 |
Target: 5'- uGUCGGGGCG---GGG-GGcGUGGGGAa -3' miRNA: 3'- cUAGCUCCGCuagCUCaCC-CACCCCU- -5' |
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5934 | 5' | -57.9 | NC_001806.1 | + | 29993 | 0.67 | 0.781509 |
Target: 5'- --cCGGGGgGGUUGGGguugGGGuUGGGGu -3' miRNA: 3'- cuaGCUCCgCUAGCUCa---CCC-ACCCCu -5' |
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5934 | 5' | -57.9 | NC_001806.1 | + | 11307 | 0.67 | 0.790529 |
Target: 5'- ---gGAGGCGuUgGGGUGGGUGucguGGGGu -3' miRNA: 3'- cuagCUCCGCuAgCUCACCCAC----CCCU- -5' |
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5934 | 5' | -57.9 | NC_001806.1 | + | 11825 | 0.67 | 0.808147 |
Target: 5'- ---nGuGGUGGUCGAGgGGGUGGaGGc -3' miRNA: 3'- cuagCuCCGCUAGCUCaCCCACC-CCu -5' |
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5934 | 5' | -57.9 | NC_001806.1 | + | 29003 | 0.67 | 0.808147 |
Target: 5'- --cUGAGGCGGagacCGaAGUGGGggggcggGGGGAc -3' miRNA: 3'- cuaGCUCCGCUa---GC-UCACCCa------CCCCU- -5' |
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5934 | 5' | -57.9 | NC_001806.1 | + | 38942 | 0.67 | 0.808147 |
Target: 5'- --aUGAcGCG-UCGGGUGGGUGGGc- -3' miRNA: 3'- cuaGCUcCGCuAGCUCACCCACCCcu -5' |
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5934 | 5' | -57.9 | NC_001806.1 | + | 5085 | 0.68 | 0.715231 |
Target: 5'- -cUCGGGGUGggCGgcggcccgucGGUGGGgcccGGGGAg -3' miRNA: 3'- cuAGCUCCGCuaGC----------UCACCCa---CCCCU- -5' |
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5934 | 5' | -57.9 | NC_001806.1 | + | 145661 | 0.68 | 0.744222 |
Target: 5'- --cCGGGGUGAUCucuggcacgcggGGGUGGGaagggucgGGGGAg -3' miRNA: 3'- cuaGCUCCGCUAG------------CUCACCCa-------CCCCU- -5' |
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5934 | 5' | -57.9 | NC_001806.1 | + | 49175 | 0.69 | 0.705418 |
Target: 5'- --gCG-GGCGAUgGGGUGGGguucaUGGGGu -3' miRNA: 3'- cuaGCuCCGCUAgCUCACCC-----ACCCCu -5' |
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5934 | 5' | -57.9 | NC_001806.1 | + | 2795 | 0.69 | 0.695547 |
Target: 5'- --cCGGGGCGccgCGGGcUGGGcGGGGGc -3' miRNA: 3'- cuaGCUCCGCua-GCUC-ACCCaCCCCU- -5' |
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5934 | 5' | -57.9 | NC_001806.1 | + | 15084 | 0.7 | 0.595358 |
Target: 5'- -cUCGGGGCGcgCGGGggaguuguUGGGaucgGGGGAu -3' miRNA: 3'- cuAGCUCCGCuaGCUC--------ACCCa---CCCCU- -5' |
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5934 | 5' | -57.9 | NC_001806.1 | + | 56670 | 0.7 | 0.595358 |
Target: 5'- gGAUCGuuGGGgGGUCGGG-GGGgacGGGGGc -3' miRNA: 3'- -CUAGC--UCCgCUAGCUCaCCCa--CCCCU- -5' |
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5934 | 5' | -57.9 | NC_001806.1 | + | 148392 | 0.7 | 0.595358 |
Target: 5'- --cCGuGGUGGgcucCGGGUGGGUGGGcGAc -3' miRNA: 3'- cuaGCuCCGCUa---GCUCACCCACCC-CU- -5' |
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5934 | 5' | -57.9 | NC_001806.1 | + | 32797 | 0.7 | 0.61542 |
Target: 5'- --cCGGGGCGcccucgaCGAGUGGGauaacgGGGGAg -3' miRNA: 3'- cuaGCUCCGCua-----GCUCACCCa-----CCCCU- -5' |
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5934 | 5' | -57.9 | NC_001806.1 | + | 8203 | 0.7 | 0.63553 |
Target: 5'- --aCGuc-CGAacgCGAGUGGGUGGGGAa -3' miRNA: 3'- cuaGCuccGCUa--GCUCACCCACCCCU- -5' |
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5934 | 5' | -57.9 | NC_001806.1 | + | 93703 | 0.71 | 0.555598 |
Target: 5'- --gUGAGG-GGUUGGG-GGGUGGGGGa -3' miRNA: 3'- cuaGCUCCgCUAGCUCaCCCACCCCU- -5' |
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5934 | 5' | -57.9 | NC_001806.1 | + | 11788 | 0.72 | 0.535999 |
Target: 5'- uGGUCGAgggagcggggauGGUGGUCGAGgGGGUGGaGGu -3' miRNA: 3'- -CUAGCU------------CCGCUAGCUCaCCCACC-CCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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