miRNA: 3'- cuaGCUCCGCU-AGCUCa--CCCa--CCCCU- -5'
miRNA: 3'- cUAgCUCCGCuAgCUCACCCACCC-CU- -5'
miRNA: 3'- cuaGCUCCGCUagCUCACCCa---CCCCU- -5'
Results 21 - 23 of 23 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 5934 | 5' | -57.9 | NC_001806.1 | + | 34775 | 0.73 | 0.460448 |
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Target: 5'- --gCGGGGCGGuUCGGGgggGGGgggGGGGGg -3' miRNA: 3'- cuaGCUCCGCU-AGCUCa--CCCa--CCCCU- -5' |
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| 5934 | 5' | -57.9 | NC_001806.1 | + | 34046 | 0.74 | 0.41619 |
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Target: 5'- aGUgGGGGCG-UgGGGUGGGUGGGaGAa -3' miRNA: 3'- cUAgCUCCGCuAgCUCACCCACCC-CU- -5' |
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| 5934 | 5' | -57.9 | NC_001806.1 | + | 32025 | 0.76 | 0.321352 |
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Target: 5'- --gUGGGGCGGagGGGUGGGggggGGGGAg -3' miRNA: 3'- cuaGCUCCGCUagCUCACCCa---CCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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