miRNA display CGI


Results 21 - 40 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5935 3' -60 NC_001806.1 + 70163 0.67 0.640574
Target:  5'- cGGGGCGGCCUCGGccCCAcuaugcagauGGCCg---- -3'
miRNA:   3'- -UCCCGCCGGGGCUu-GGU----------UCGGaacua -5'
5935 3' -60 NC_001806.1 + 22454 0.67 0.620347
Target:  5'- -cGGCGGCCgCCGuGGCCAugAGCCgccGAUa -3'
miRNA:   3'- ucCCGCCGG-GGC-UUGGU--UCGGaa-CUA- -5'
5935 3' -60 NC_001806.1 + 120095 0.67 0.620347
Target:  5'- -uGGCgugccuccgGGCCCUGGGCCAGGCCa---- -3'
miRNA:   3'- ucCCG---------CCGGGGCUUGGUUCGGaacua -5'
5935 3' -60 NC_001806.1 + 79400 0.68 0.610244
Target:  5'- -cGGCGGCCCCGcGCCccuCCUUGc- -3'
miRNA:   3'- ucCCGCCGGGGCuUGGuucGGAACua -5'
5935 3' -60 NC_001806.1 + 68465 0.68 0.600156
Target:  5'- uGGuGGCucuccccgaGGCCCCcGACCAGGCCUUc-- -3'
miRNA:   3'- -UC-CCG---------CCGGGGcUUGGUUCGGAAcua -5'
5935 3' -60 NC_001806.1 + 70857 0.68 0.600156
Target:  5'- cGGcGCGGCCgCGGGacCCGAGCCcgUGGc -3'
miRNA:   3'- uCC-CGCCGGgGCUU--GGUUCGGa-ACUa -5'
5935 3' -60 NC_001806.1 + 150880 0.68 0.590092
Target:  5'- cGGGCcaGGgCCCGGGCaCGGGCCUcGGg -3'
miRNA:   3'- uCCCG--CCgGGGCUUG-GUUCGGAaCUa -5'
5935 3' -60 NC_001806.1 + 73996 0.68 0.580057
Target:  5'- cGGGGCGGCCCCGcagggggcuCCGcGCCc---- -3'
miRNA:   3'- -UCCCGCCGGGGCuu-------GGUuCGGaacua -5'
5935 3' -60 NC_001806.1 + 58338 0.68 0.580057
Target:  5'- -uGGCGGCCgCCuGGCCc-GCCUUGGUg -3'
miRNA:   3'- ucCCGCCGG-GGcUUGGuuCGGAACUA- -5'
5935 3' -60 NC_001806.1 + 24540 0.68 0.580057
Target:  5'- gGGcGGCGGCCUCGGggaccACCGAcGCCaUGGc -3'
miRNA:   3'- -UC-CCGCCGGGGCU-----UGGUU-CGGaACUa -5'
5935 3' -60 NC_001806.1 + 123143 0.68 0.579055
Target:  5'- -cGGCGGCgaaguacCCCGAucaCGGGCCUUGGg -3'
miRNA:   3'- ucCCGCCG-------GGGCUug-GUUCGGAACUa -5'
5935 3' -60 NC_001806.1 + 105143 0.68 0.570059
Target:  5'- gGGGGCGGCCgugCCGccccaggguGCCGAGCCccaGAg -3'
miRNA:   3'- -UCCCGCCGG---GGCu--------UGGUUCGGaa-CUa -5'
5935 3' -60 NC_001806.1 + 149803 0.69 0.550196
Target:  5'- gGGGGCGGCCCU----CAGGCCggcgGGUa -3'
miRNA:   3'- -UCCCGCCGGGGcuugGUUCGGaa--CUA- -5'
5935 3' -60 NC_001806.1 + 115855 0.69 0.550196
Target:  5'- gAGGGCcgGGCCCCauaaaacCCAAGCCggGAc -3'
miRNA:   3'- -UCCCG--CCGGGGcuu----GGUUCGGaaCUa -5'
5935 3' -60 NC_001806.1 + 27458 0.69 0.540344
Target:  5'- uGGGCGGCCCCG-GCCGc-CCUUc-- -3'
miRNA:   3'- uCCCGCCGGGGCuUGGUucGGAAcua -5'
5935 3' -60 NC_001806.1 + 55251 0.69 0.540344
Target:  5'- gAGGGuCGGCgCCCGGGCC-GGCCc---- -3'
miRNA:   3'- -UCCC-GCCG-GGGCUUGGuUCGGaacua -5'
5935 3' -60 NC_001806.1 + 106118 0.69 0.540344
Target:  5'- cGGcCGGcCCCCGAACgCGAGCCUg--- -3'
miRNA:   3'- uCCcGCC-GGGGCUUG-GUUCGGAacua -5'
5935 3' -60 NC_001806.1 + 112257 0.69 0.540344
Target:  5'- cAGGGUGGCCCgGGcgacccuggucGCCGAGCUa---- -3'
miRNA:   3'- -UCCCGCCGGGgCU-----------UGGUUCGGaacua -5'
5935 3' -60 NC_001806.1 + 151296 0.69 0.530552
Target:  5'- gGGGGCGGCggCGGuggGCCGGGCCUcUGGc -3'
miRNA:   3'- -UCCCGCCGggGCU---UGGUUCGGA-ACUa -5'
5935 3' -60 NC_001806.1 + 4183 0.69 0.530552
Target:  5'- gGGGGCgggGGCCCgGcGCCGGGCCa---- -3'
miRNA:   3'- -UCCCG---CCGGGgCuUGGUUCGGaacua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.