miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5935 5' -64.9 NC_001806.1 + 135077 0.67 0.460564
Target:  5'- aCGcgCCGGGCCggaaauCGGCgccgaccggggagGGGGGCGGg- -3'
miRNA:   3'- gGUa-GGCCCGG------GUCGa------------CCCCCGCCag -5'
5935 5' -64.9 NC_001806.1 + 28596 0.67 0.455344
Target:  5'- ---aCCGGggucGCCguGUUGGGGGCguGGUCc -3'
miRNA:   3'- gguaGGCC----CGGguCGACCCCCG--CCAG- -5'
5935 5' -64.9 NC_001806.1 + 119546 0.67 0.43818
Target:  5'- gCCGUCagcggGGGCgCCA--UGGGGGCGGc- -3'
miRNA:   3'- -GGUAGg----CCCG-GGUcgACCCCCGCCag -5'
5935 5' -64.9 NC_001806.1 + 3026 0.67 0.435637
Target:  5'- gCGUCCGGuGCgcuggccgccgccgCCAGCaGGGGGCGcaggcucugguuGUCa -3'
miRNA:   3'- gGUAGGCC-CG--------------GGUCGaCCCCCGC------------CAG- -5'
5935 5' -64.9 NC_001806.1 + 29109 0.67 0.429737
Target:  5'- ---gCUGGGgCCgcagGGCguggauggGGGGGCGGUCu -3'
miRNA:   3'- gguaGGCCCgGG----UCGa-------CCCCCGCCAG- -5'
5935 5' -64.9 NC_001806.1 + 36685 0.67 0.429737
Target:  5'- -uGUCCgGGGCCCguaagaacaGGUUGGugaGGGgGGUCg -3'
miRNA:   3'- ggUAGG-CCCGGG---------UCGACC---CCCgCCAG- -5'
5935 5' -64.9 NC_001806.1 + 1414 0.67 0.429737
Target:  5'- cCCGUggCCGaGGCCCAGCgaaucccGGGCGG-Cg -3'
miRNA:   3'- -GGUA--GGC-CCGGGUCGacc----CCCGCCaG- -5'
5935 5' -64.9 NC_001806.1 + 31075 0.67 0.429737
Target:  5'- aCCAgaCGGGaaacauggcgaCCCGGCUGcGGGccGCGGUCc -3'
miRNA:   3'- -GGUagGCCC-----------GGGUCGAC-CCC--CGCCAG- -5'
5935 5' -64.9 NC_001806.1 + 25913 0.68 0.421392
Target:  5'- gCgGUCCGGGCggcgugcgcgcgCgCGGCgggcgUGGGGGCGGg- -3'
miRNA:   3'- -GgUAGGCCCG------------G-GUCG-----ACCCCCGCCag -5'
5935 5' -64.9 NC_001806.1 + 120304 0.68 0.420563
Target:  5'- gCCGUCCuGGCaCAcCUGgggggacGGGGCGGUCg -3'
miRNA:   3'- -GGUAGGcCCGgGUcGAC-------CCCCGCCAG- -5'
5935 5' -64.9 NC_001806.1 + 128530 0.68 0.420563
Target:  5'- gCCAUgCGGGCCgCAGCcagacgGcggcccgcguccaGGGcGCGGUCg -3'
miRNA:   3'- -GGUAgGCCCGG-GUCGa-----C-------------CCC-CGCCAG- -5'
5935 5' -64.9 NC_001806.1 + 76586 0.68 0.413145
Target:  5'- gCG-CCGGGCCCAGCUcGaGGCcgagGGUCu -3'
miRNA:   3'- gGUaGGCCCGGGUCGAcCcCCG----CCAG- -5'
5935 5' -64.9 NC_001806.1 + 94793 0.68 0.413145
Target:  5'- aCCAUgCGcuGGCCCGGaCgcgGGGGGCGa-- -3'
miRNA:   3'- -GGUAgGC--CCGGGUC-Ga--CCCCCGCcag -5'
5935 5' -64.9 NC_001806.1 + 151433 0.68 0.413145
Target:  5'- -----gGGGCCCaccGGCgGGGGGCGG-Cg -3'
miRNA:   3'- gguaggCCCGGG---UCGaCCCCCGCCaG- -5'
5935 5' -64.9 NC_001806.1 + 20372 0.68 0.404998
Target:  5'- gCCGUCCcguuGGuCCCGGCguccGGcGGGCGGg- -3'
miRNA:   3'- -GGUAGGc---CC-GGGUCGa---CC-CCCGCCag -5'
5935 5' -64.9 NC_001806.1 + 132847 0.68 0.404998
Target:  5'- gCCGU-CGGGCCCGuCUGGacGGcGCGGUUu -3'
miRNA:   3'- -GGUAgGCCCGGGUcGACC--CC-CGCCAG- -5'
5935 5' -64.9 NC_001806.1 + 32984 0.68 0.396953
Target:  5'- gCCGgggccCCGGGCCgGGCcgccacGGGGGcCGGcCg -3'
miRNA:   3'- -GGUa----GGCCCGGgUCGa-----CCCCC-GCCaG- -5'
5935 5' -64.9 NC_001806.1 + 102105 0.68 0.389011
Target:  5'- --cUCCGGggaucagcauGCCCAGCUGcaGGCGGUUg -3'
miRNA:   3'- gguAGGCC----------CGGGUCGACccCCGCCAG- -5'
5935 5' -64.9 NC_001806.1 + 5075 0.68 0.389011
Target:  5'- gCgGUCUGGGCUCgGGgUGGGcGGCGGcCc -3'
miRNA:   3'- -GgUAGGCCCGGG-UCgACCC-CCGCCaG- -5'
5935 5' -64.9 NC_001806.1 + 25651 0.68 0.381175
Target:  5'- ---cUgGGGCUgGGgaGGGGGCGGUg -3'
miRNA:   3'- gguaGgCCCGGgUCgaCCCCCGCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.