miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5936 3' -61.3 NC_001806.1 + 11855 0.66 0.745879
Target:  5'- aGGGGcGG-GUugGUauacGCUCGCCggggccagacgCGGGGc -3'
miRNA:   3'- -CCCC-CCaCAugCA----CGGGUGGa----------GCCCC- -5'
5936 3' -61.3 NC_001806.1 + 22083 0.66 0.737572
Target:  5'- gGGGcGGGUGcuguacgGCGgccugggcgacagccGCCCggGCCUCuGGGGg -3'
miRNA:   3'- -CCC-CCCACa------UGCa--------------CGGG--UGGAG-CCCC- -5'
5936 3' -61.3 NC_001806.1 + 85774 0.66 0.736644
Target:  5'- cGGGGGGU------GCCaCACUUCGGGa -3'
miRNA:   3'- -CCCCCCAcaugcaCGG-GUGGAGCCCc -5'
5936 3' -61.3 NC_001806.1 + 10705 0.66 0.727328
Target:  5'- gGGGGGGcGUACGccaUCGCCagCGGGa -3'
miRNA:   3'- -CCCCCCaCAUGCacgGGUGGa-GCCCc -5'
5936 3' -61.3 NC_001806.1 + 54119 0.66 0.717937
Target:  5'- uGGGGGGUGUccCGggGCCCA----GGGGc -3'
miRNA:   3'- -CCCCCCACAu-GCa-CGGGUggagCCCC- -5'
5936 3' -61.3 NC_001806.1 + 151233 0.66 0.717937
Target:  5'- gGGGGGGUGggagGgGUcaGCCCcGCCcccCGGGc -3'
miRNA:   3'- -CCCCCCACa---UgCA--CGGG-UGGa--GCCCc -5'
5936 3' -61.3 NC_001806.1 + 19492 0.66 0.702777
Target:  5'- gGGGcGGGaagggcgcuugcgcuUGcGCGUGCCCAggggCGGGGa -3'
miRNA:   3'- -CCC-CCC---------------ACaUGCACGGGUgga-GCCCC- -5'
5936 3' -61.3 NC_001806.1 + 20646 0.67 0.67979
Target:  5'- cGGGccgcggccacGGGcccccgGCGUGCCgGCgUCGGGGc -3'
miRNA:   3'- -CCC----------CCCaca---UGCACGGgUGgAGCCCC- -5'
5936 3' -61.3 NC_001806.1 + 10367 0.67 0.67979
Target:  5'- cGGGGGc--GCuggGCCaagACCUCGGGGg -3'
miRNA:   3'- cCCCCCacaUGca-CGGg--UGGAGCCCC- -5'
5936 3' -61.3 NC_001806.1 + 136899 0.67 0.67979
Target:  5'- -uGGGGUGaaccuuUACccaGCCguCCUCGGGGg -3'
miRNA:   3'- ccCCCCAC------AUGca-CGGguGGAGCCCC- -5'
5936 3' -61.3 NC_001806.1 + 31009 0.67 0.670146
Target:  5'- cGGGGGacUGCcUGCCCAuCCUggacauggagaCGGGGa -3'
miRNA:   3'- cCCCCCacAUGcACGGGU-GGA-----------GCCCC- -5'
5936 3' -61.3 NC_001806.1 + 147661 0.67 0.660475
Target:  5'- gGGGcGGGcGgcCG-GCuCCGCCcCGGGGg -3'
miRNA:   3'- -CCC-CCCaCauGCaCG-GGUGGaGCCCC- -5'
5936 3' -61.3 NC_001806.1 + 148204 0.67 0.650782
Target:  5'- cGGGGGGcgggcgGUACGUaGUCUGCUgcaagagacaaCGGGGg -3'
miRNA:   3'- -CCCCCCa-----CAUGCA-CGGGUGGa----------GCCCC- -5'
5936 3' -61.3 NC_001806.1 + 66821 0.68 0.631365
Target:  5'- cGGGGccggcccgGGUGgccgGUGUGCgCCGCCUCcuGGGGc -3'
miRNA:   3'- -CCCC--------CCACa---UGCACG-GGUGGAG--CCCC- -5'
5936 3' -61.3 NC_001806.1 + 15059 0.68 0.631365
Target:  5'- uGGGGGGUGUcuuCGgGCgaCuggUCUCGGGGc -3'
miRNA:   3'- -CCCCCCACAu--GCaCGg-Gu--GGAGCCCC- -5'
5936 3' -61.3 NC_001806.1 + 59051 0.68 0.621654
Target:  5'- cGGGGGag-GCGgggGCCaCACCgccaGGGGa -3'
miRNA:   3'- cCCCCCacaUGCa--CGG-GUGGag--CCCC- -5'
5936 3' -61.3 NC_001806.1 + 61547 0.68 0.621654
Target:  5'- cGGGGGcuugGCGUGCCCGCCga-GGu -3'
miRNA:   3'- cCCCCCaca-UGCACGGGUGGagcCCc -5'
5936 3' -61.3 NC_001806.1 + 55710 0.68 0.619712
Target:  5'- uGGGGGUGaccuccgggcugGCG-GCUgACC-CGGGGg -3'
miRNA:   3'- cCCCCCACa-----------UGCaCGGgUGGaGCCCC- -5'
5936 3' -61.3 NC_001806.1 + 56685 0.68 0.611949
Target:  5'- cGGGGGGg--ACGgggGCCCgggaACCcCGGGu -3'
miRNA:   3'- -CCCCCCacaUGCa--CGGG----UGGaGCCCc -5'
5936 3' -61.3 NC_001806.1 + 29974 0.68 0.611949
Target:  5'- cGGGGGGcGUcUG-GCCC-CUcCGGGGg -3'
miRNA:   3'- -CCCCCCaCAuGCaCGGGuGGaGCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.