miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5936 5' -57.7 NC_001806.1 + 122452 0.66 0.864406
Target:  5'- gUCCCCGagGAGCacgGCGGCCAGa---- -3'
miRNA:   3'- aGGGGGCagUUUG---CGCCGGUCacagu -5'
5936 5' -57.7 NC_001806.1 + 68083 0.66 0.856866
Target:  5'- gUCCCCCaccc-ACGCGaGCCGGgcGUCAu -3'
miRNA:   3'- -AGGGGGcaguuUGCGC-CGGUCa-CAGU- -5'
5936 5' -57.7 NC_001806.1 + 23971 0.66 0.849129
Target:  5'- --gUCCGcCGAGCGCGGCgGGcUGUCc -3'
miRNA:   3'- aggGGGCaGUUUGCGCCGgUC-ACAGu -5'
5936 5' -57.7 NC_001806.1 + 67751 0.66 0.849129
Target:  5'- aCCCCacaGcCAAACGCGGCUaccgccuccGGUGg-- -3'
miRNA:   3'- aGGGGg--CaGUUUGCGCCGG---------UCACagu -5'
5936 5' -57.7 NC_001806.1 + 73047 0.66 0.84677
Target:  5'- aCCCCCGUCGGGgcCGCGGuccccgccuccguuCCGGagccUGUCc -3'
miRNA:   3'- aGGGGGCAGUUU--GCGCC--------------GGUC----ACAGu -5'
5936 5' -57.7 NC_001806.1 + 1900 0.66 0.8412
Target:  5'- aCCCCCGggcCGAacACGCGGCCcgAG-GcCAg -3'
miRNA:   3'- aGGGGGCa--GUU--UGCGCCGG--UCaCaGU- -5'
5936 5' -57.7 NC_001806.1 + 133190 0.66 0.8412
Target:  5'- aCCCCCaagacgCGGAUGCGGCUuccggGGUGaUCGa -3'
miRNA:   3'- aGGGGGca----GUUUGCGCCGG-----UCAC-AGU- -5'
5936 5' -57.7 NC_001806.1 + 76807 0.66 0.833086
Target:  5'- --aCCCGcUAAGCGCGGCCAGcGgCGa -3'
miRNA:   3'- aggGGGCaGUUUGCGCCGGUCaCaGU- -5'
5936 5' -57.7 NC_001806.1 + 99197 0.66 0.833086
Target:  5'- cUCCCCCGggugucCGCGGCCuGUuUCc -3'
miRNA:   3'- -AGGGGGCaguuu-GCGCCGGuCAcAGu -5'
5936 5' -57.7 NC_001806.1 + 97809 0.66 0.833086
Target:  5'- gCCCCCGcCGccCGgGGCCAGcGcCAa -3'
miRNA:   3'- aGGGGGCaGUuuGCgCCGGUCaCaGU- -5'
5936 5' -57.7 NC_001806.1 + 5266 0.66 0.824794
Target:  5'- cCCCgCCGUCGAcgcggaacuaGCGCGGaCCGGUc--- -3'
miRNA:   3'- aGGG-GGCAGUU----------UGCGCC-GGUCAcagu -5'
5936 5' -57.7 NC_001806.1 + 41632 0.66 0.824794
Target:  5'- -gCCCUGcuguUCcGugGCGGCCAGUcUCAg -3'
miRNA:   3'- agGGGGC----AGuUugCGCCGGUCAcAGU- -5'
5936 5' -57.7 NC_001806.1 + 100379 0.67 0.816331
Target:  5'- gCUCCCGUCGccgggcGGCGCgggGGCCGGggugcccgaUGUCGg -3'
miRNA:   3'- aGGGGGCAGU------UUGCG---CCGGUC---------ACAGU- -5'
5936 5' -57.7 NC_001806.1 + 119363 0.67 0.798925
Target:  5'- gCCCCCGgcggCGAcacgacCGCGGCCcaggacGUGUCc -3'
miRNA:   3'- aGGGGGCa---GUUu-----GCGCCGGu-----CACAGu -5'
5936 5' -57.7 NC_001806.1 + 92883 0.67 0.798925
Target:  5'- gUCCCCCcagcgugCAGGCuGCGGCCGcGUGg-- -3'
miRNA:   3'- -AGGGGGca-----GUUUG-CGCCGGU-CACagu -5'
5936 5' -57.7 NC_001806.1 + 144647 0.67 0.789998
Target:  5'- cUCCCCC--UAAGCGcCGGCCGGccgcugGUCu -3'
miRNA:   3'- -AGGGGGcaGUUUGC-GCCGGUCa-----CAGu -5'
5936 5' -57.7 NC_001806.1 + 27880 0.67 0.789998
Target:  5'- cUCCCCUGggacGCGCGGCCAuUGg-- -3'
miRNA:   3'- -AGGGGGCaguuUGCGCCGGUcACagu -5'
5936 5' -57.7 NC_001806.1 + 5406 0.67 0.780932
Target:  5'- gUCCCgCGUCGGGuCGUGGaUCcGUGUCGg -3'
miRNA:   3'- -AGGGgGCAGUUU-GCGCC-GGuCACAGU- -5'
5936 5' -57.7 NC_001806.1 + 72820 0.67 0.780932
Target:  5'- aCCCCCGccgCAGAgGCGGCCGa----- -3'
miRNA:   3'- aGGGGGCa--GUUUgCGCCGGUcacagu -5'
5936 5' -57.7 NC_001806.1 + 50090 0.67 0.771736
Target:  5'- -gUCCCGUCGGGgcCGCGGCC-GUGcCGu -3'
miRNA:   3'- agGGGGCAGUUU--GCGCCGGuCACaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.