miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5938 3' -61.6 NC_001806.1 + 42308 0.66 0.687156
Target:  5'- cAGCGCUGaCGG---UGUCGGggcGGGGGGCg -3'
miRNA:   3'- -UUGUGGC-GCCccaACAGCC---CCCUCCG- -5'
5938 3' -61.6 NC_001806.1 + 55068 0.66 0.687156
Target:  5'- -uCACCGCGuGGGgcugGagGGucagagacGGGGGGCg -3'
miRNA:   3'- uuGUGGCGC-CCCaa--CagCC--------CCCUCCG- -5'
5938 3' -61.6 NC_001806.1 + 20990 0.66 0.687156
Target:  5'- --gACgGCGGGGgucGUCGGGGuccguGGGUc -3'
miRNA:   3'- uugUGgCGCCCCaa-CAGCCCCc----UCCG- -5'
5938 3' -61.6 NC_001806.1 + 1485 0.66 0.687156
Target:  5'- cAGCACCaGCGGGGgggcgucgucGUCGGgcuccagcaGGGcgcGGGCg -3'
miRNA:   3'- -UUGUGG-CGCCCCaa--------CAGCC---------CCC---UCCG- -5'
5938 3' -61.6 NC_001806.1 + 45506 0.66 0.667584
Target:  5'- -cCugUGUGGGG-UGagGGGuGGGGGUg -3'
miRNA:   3'- uuGugGCGCCCCaACagCCC-CCUCCG- -5'
5938 3' -61.6 NC_001806.1 + 147765 0.66 0.667584
Target:  5'- cGACGCggccgcggaCGCGGGGggccCGGggcGGGGGGCg -3'
miRNA:   3'- -UUGUG---------GCGCCCCaacaGCC---CCCUCCG- -5'
5938 3' -61.6 NC_001806.1 + 34078 0.66 0.657754
Target:  5'- gGAgACUgggGUGGGGgUGUCGGuGGGuGGUu -3'
miRNA:   3'- -UUgUGG---CGCCCCaACAGCC-CCCuCCG- -5'
5938 3' -61.6 NC_001806.1 + 25525 0.66 0.657754
Target:  5'- cGCGCCGgGGaGGgcugggGcCGGGGaGGGCu -3'
miRNA:   3'- uUGUGGCgCC-CCaa----CaGCCCCcUCCG- -5'
5938 3' -61.6 NC_001806.1 + 1840 0.66 0.657754
Target:  5'- aGGCGCaGCGGcGGcgcGUCGGGGuacAGGCg -3'
miRNA:   3'- -UUGUGgCGCC-CCaa-CAGCCCCc--UCCG- -5'
5938 3' -61.6 NC_001806.1 + 76549 0.66 0.657754
Target:  5'- -uCACgGCGGGGcUG-CGGGaGGugcuGGCc -3'
miRNA:   3'- uuGUGgCGCCCCaACaGCCC-CCu---CCG- -5'
5938 3' -61.6 NC_001806.1 + 67951 0.66 0.646919
Target:  5'- uAACACCccgcgaagacGCGGGGUacucgcaacgccUG-CGGGGGuccuggaGGGCc -3'
miRNA:   3'- -UUGUGG----------CGCCCCA------------ACaGCCCCC-------UCCG- -5'
5938 3' -61.6 NC_001806.1 + 150103 0.66 0.646919
Target:  5'- -cCACCGCGGGGcggccccGUCcccGGGGAccaacccGGCg -3'
miRNA:   3'- uuGUGGCGCCCCaa-----CAGc--CCCCU-------CCG- -5'
5938 3' -61.6 NC_001806.1 + 95426 0.66 0.638044
Target:  5'- -uCGCCGCGGGcc---CGGGGGgcagGGGCc -3'
miRNA:   3'- uuGUGGCGCCCcaacaGCCCCC----UCCG- -5'
5938 3' -61.6 NC_001806.1 + 38072 0.66 0.635084
Target:  5'- -cCGCCGCGGgcaggcugggcuuuGGUcgGUgGGGguuGGAGGCg -3'
miRNA:   3'- uuGUGGCGCC--------------CCAa-CAgCCC---CCUCCG- -5'
5938 3' -61.6 NC_001806.1 + 4170 0.67 0.628178
Target:  5'- cAGCACCcgcccCGGGGg---CGGGGGcccGGCg -3'
miRNA:   3'- -UUGUGGc----GCCCCaacaGCCCCCu--CCG- -5'
5938 3' -61.6 NC_001806.1 + 102756 0.67 0.628178
Target:  5'- cGGCACUGCGGGug-GUCaGGGGAaaguccgugauGGUg -3'
miRNA:   3'- -UUGUGGCGCCCcaaCAGcCCCCU-----------CCG- -5'
5938 3' -61.6 NC_001806.1 + 143233 0.67 0.628178
Target:  5'- cAAC-CCGUgcuGGuGGUgcggGUUGGGGGGGGa -3'
miRNA:   3'- -UUGuGGCG---CC-CCAa---CAGCCCCCUCCg -5'
5938 3' -61.6 NC_001806.1 + 66209 0.67 0.627192
Target:  5'- aGugACaGCGGGGaagggGUUGGGGGcggagcguuguguGGGCg -3'
miRNA:   3'- -UugUGgCGCCCCaa---CAGCCCCC-------------UCCG- -5'
5938 3' -61.6 NC_001806.1 + 67688 0.67 0.618316
Target:  5'- cAAgACC-CGGGGgaggGagGGGGGGGGg -3'
miRNA:   3'- -UUgUGGcGCCCCaa--CagCCCCCUCCg -5'
5938 3' -61.6 NC_001806.1 + 29111 0.67 0.618316
Target:  5'- uGGgGCCGCaGGGcgUGgauGGGGGGGCg -3'
miRNA:   3'- -UUgUGGCGcCCCa-ACagcCCCCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.