miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5938 5' -56.5 NC_001806.1 + 134675 0.66 0.907274
Target:  5'- gGACCgCCAC-CGCGA-AGCCgCGAu- -3'
miRNA:   3'- aCUGGgGGUGcGCGCUaUUGG-GCUug -5'
5938 5' -56.5 NC_001806.1 + 79299 0.66 0.907274
Target:  5'- cUGGCCCCCACGCuauucacCGAcgccACCCccggcGAGCc -3'
miRNA:   3'- -ACUGGGGGUGCGc------GCUau--UGGG-----CUUG- -5'
5938 5' -56.5 NC_001806.1 + 105675 0.66 0.907274
Target:  5'- -aACCCCCAaguuCGgGUGAaGGCCCaGGGCu -3'
miRNA:   3'- acUGGGGGU----GCgCGCUaUUGGG-CUUG- -5'
5938 5' -56.5 NC_001806.1 + 118913 0.66 0.907274
Target:  5'- cUGGCCCCCGuCGUGCcGGcacACCCuGGCc -3'
miRNA:   3'- -ACUGGGGGU-GCGCG-CUau-UGGGcUUG- -5'
5938 5' -56.5 NC_001806.1 + 12787 0.66 0.907274
Target:  5'- -cGCCCaCCGCGCcgGCGAUcaGGCCCa--- -3'
miRNA:   3'- acUGGG-GGUGCG--CGCUA--UUGGGcuug -5'
5938 5' -56.5 NC_001806.1 + 43387 0.66 0.907274
Target:  5'- cGACaCCCgACGCcucGUGAaGGCCCGcGCc -3'
miRNA:   3'- aCUG-GGGgUGCG---CGCUaUUGGGCuUG- -5'
5938 5' -56.5 NC_001806.1 + 50615 0.66 0.907274
Target:  5'- cGGCCCUgGCGacCGUGAccuUAaaguacGCCCGGGCg -3'
miRNA:   3'- aCUGGGGgUGC--GCGCU---AU------UGGGCUUG- -5'
5938 5' -56.5 NC_001806.1 + 130075 0.66 0.907274
Target:  5'- cGGCUCCgGgGCGCGcucggAGCCCGucuuuACg -3'
miRNA:   3'- aCUGGGGgUgCGCGCua---UUGGGCu----UG- -5'
5938 5' -56.5 NC_001806.1 + 5573 0.66 0.906663
Target:  5'- cGACCCCgccccgacgccggCACGC-CGggGGCCCGuGGCc -3'
miRNA:   3'- aCUGGGG-------------GUGCGcGCuaUUGGGC-UUG- -5'
5938 5' -56.5 NC_001806.1 + 25872 0.66 0.903574
Target:  5'- gGGCCCCCcgcgggcgcgcGCGCGCGcaAAaaaggcgggcggcggUCCGGGCg -3'
miRNA:   3'- aCUGGGGG-----------UGCGCGCuaUU---------------GGGCUUG- -5'
5938 5' -56.5 NC_001806.1 + 92362 0.66 0.903574
Target:  5'- cGGCCCCCGCcgagagcagcuucgaGgGCGAcguuGCCCGcguGACc -3'
miRNA:   3'- aCUGGGGGUG---------------CgCGCUau--UGGGC---UUG- -5'
5938 5' -56.5 NC_001806.1 + 107033 0.66 0.901061
Target:  5'- uUGGCCgCCCGCGgggcCGCGGgcuguGCCgCGGAUu -3'
miRNA:   3'- -ACUGG-GGGUGC----GCGCUau---UGG-GCUUG- -5'
5938 5' -56.5 NC_001806.1 + 84078 0.66 0.901061
Target:  5'- gGGCCCCagcugCGCGCugccGCGGaGGCCCGucGCg -3'
miRNA:   3'- aCUGGGG-----GUGCG----CGCUaUUGGGCu-UG- -5'
5938 5' -56.5 NC_001806.1 + 96543 0.66 0.901061
Target:  5'- ---gCCCCugGCGCccccccaacgGggGACCCGAAa -3'
miRNA:   3'- acugGGGGugCGCG----------CuaUUGGGCUUg -5'
5938 5' -56.5 NC_001806.1 + 127186 0.66 0.901061
Target:  5'- -uGCCCCCggauAUGCGCGGgguuACgCGGGCc -3'
miRNA:   3'- acUGGGGG----UGCGCGCUau--UGgGCUUG- -5'
5938 5' -56.5 NC_001806.1 + 149425 0.66 0.901061
Target:  5'- gGGgUCCCACG-GCGAc--CCCGGGCc -3'
miRNA:   3'- aCUgGGGGUGCgCGCUauuGGGCUUG- -5'
5938 5' -56.5 NC_001806.1 + 47233 0.66 0.900428
Target:  5'- cGGCCCCCccgcuguACGCaaCGGggcGCCUGAGCc -3'
miRNA:   3'- aCUGGGGG-------UGCGc-GCUau-UGGGCUUG- -5'
5938 5' -56.5 NC_001806.1 + 57868 0.66 0.895274
Target:  5'- gGGCCgugUCCGCGCGCcauccucgcccCCCGAGCg -3'
miRNA:   3'- aCUGG---GGGUGCGCGcuauu------GGGCUUG- -5'
5938 5' -56.5 NC_001806.1 + 50817 0.66 0.894619
Target:  5'- -cACCCCCcugcgcuacGCGUGCGucc-UCCGAGCg -3'
miRNA:   3'- acUGGGGG---------UGCGCGCuauuGGGCUUG- -5'
5938 5' -56.5 NC_001806.1 + 20302 0.66 0.894619
Target:  5'- cGcCCCCUugGgGCGGUcccGCCCGccGGCc -3'
miRNA:   3'- aCuGGGGGugCgCGCUAu--UGGGC--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.