miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5939 3' -56.7 NC_001806.1 + 127770 0.66 0.873595
Target:  5'- -gGGCCUGuGGcGGCCGucucgCGAUCCGc -3'
miRNA:   3'- cgUUGGACuCC-CCGGUca---GCUAGGUu -5'
5939 3' -56.7 NC_001806.1 + 22864 0.66 0.858522
Target:  5'- gGCGACCUGGcggccgucccGGGGCUGGcCGGggcCCGg -3'
miRNA:   3'- -CGUUGGACU----------CCCCGGUCaGCUa--GGUu -5'
5939 3' -56.7 NC_001806.1 + 13514 0.66 0.858522
Target:  5'- aCAAUCUGGGGGGCCuccGaCGGUgCGu -3'
miRNA:   3'- cGUUGGACUCCCCGGu--CaGCUAgGUu -5'
5939 3' -56.7 NC_001806.1 + 106428 0.67 0.825943
Target:  5'- aCGACCUGGuuggccacccGGGGCCuGUUGAgauccCCAGg -3'
miRNA:   3'- cGUUGGACU----------CCCCGGuCAGCUa----GGUU- -5'
5939 3' -56.7 NC_001806.1 + 98596 0.67 0.817333
Target:  5'- gGCGACCUGGGGcGCgCGGUCGG--CAAg -3'
miRNA:   3'- -CGUUGGACUCCcCG-GUCAGCUagGUU- -5'
5939 3' -56.7 NC_001806.1 + 18514 0.67 0.808553
Target:  5'- aGCccuCCUGGGGGGuCCAGUCaaacuccCCAAa -3'
miRNA:   3'- -CGuu-GGACUCCCC-GGUCAGcua----GGUU- -5'
5939 3' -56.7 NC_001806.1 + 77241 0.67 0.808553
Target:  5'- aCAcCCUGGGGGGCCuGUUGGcggaaUUCGAc -3'
miRNA:   3'- cGUuGGACUCCCCGGuCAGCU-----AGGUU- -5'
5939 3' -56.7 NC_001806.1 + 96976 0.67 0.790514
Target:  5'- --cGCCaaGGGGGUCuGUCGGUCCAc -3'
miRNA:   3'- cguUGGacUCCCCGGuCAGCUAGGUu -5'
5939 3' -56.7 NC_001806.1 + 120312 0.68 0.743048
Target:  5'- gGCAcACCUGGGGGGaCGGggCGGUCgGGg -3'
miRNA:   3'- -CGU-UGGACUCCCCgGUCa-GCUAGgUU- -5'
5939 3' -56.7 NC_001806.1 + 23943 0.68 0.733222
Target:  5'- gGCGggGCCUGGGGGggccGCCGGagUGGUCCGc -3'
miRNA:   3'- -CGU--UGGACUCCC----CGGUCa-GCUAGGUu -5'
5939 3' -56.7 NC_001806.1 + 68589 0.71 0.580264
Target:  5'- gGCGGCCcu-GGGGCCGGUCcgcGUCCGc -3'
miRNA:   3'- -CGUUGGacuCCCCGGUCAGc--UAGGUu -5'
5939 3' -56.7 NC_001806.1 + 114593 0.73 0.490704
Target:  5'- cCGGCuCUG-GGGGCCAacuacuuuucGUCGAUCCGAc -3'
miRNA:   3'- cGUUG-GACuCCCCGGU----------CAGCUAGGUU- -5'
5939 3' -56.7 NC_001806.1 + 30038 0.74 0.443766
Target:  5'- gGCGGCC-GAGGGGCCGGaCGggCCc- -3'
miRNA:   3'- -CGUUGGaCUCCCCGGUCaGCuaGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.