miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5939 5' -66.7 NC_001806.1 + 99638 0.66 0.476175
Target:  5'- -aUgGGGGCgguggCGGGCCUGGCGgGCa -3'
miRNA:   3'- cgGgCCUCGag---GCCCGGGCCGUgCGc -5'
5939 5' -66.7 NC_001806.1 + 60087 0.66 0.476175
Target:  5'- aUUCGcGuuCUCCGGGCCCuggGGUACGCc -3'
miRNA:   3'- cGGGC-CucGAGGCCCGGG---CCGUGCGc -5'
5939 5' -66.7 NC_001806.1 + 33103 0.66 0.476175
Target:  5'- uGCCgGcGAGCgggUCCggacgGGGCCCGGaccgcCGCGg -3'
miRNA:   3'- -CGGgC-CUCG---AGG-----CCCGGGCCgu---GCGC- -5'
5939 5' -66.7 NC_001806.1 + 132625 0.66 0.475304
Target:  5'- gGCCaCGGccgagucGGCa-CGGGaCCUGGUGCGCGg -3'
miRNA:   3'- -CGG-GCC-------UCGagGCCC-GGGCCGUGCGC- -5'
5939 5' -66.7 NC_001806.1 + 117361 0.66 0.467496
Target:  5'- uGUgCGGAGgUCC-GGCCUGGgC-CGCGa -3'
miRNA:   3'- -CGgGCCUCgAGGcCCGGGCC-GuGCGC- -5'
5939 5' -66.7 NC_001806.1 + 144589 0.66 0.467496
Target:  5'- uGCCgCGGcuCUCCGGGCCCcccuGCAgcCGgGg -3'
miRNA:   3'- -CGG-GCCucGAGGCCCGGGc---CGU--GCgC- -5'
5939 5' -66.7 NC_001806.1 + 131821 0.66 0.467496
Target:  5'- cGCgaCGGAGCUgCGGGauuucuaCGGCucCGCGg -3'
miRNA:   3'- -CGg-GCCUCGAgGCCCgg-----GCCGu-GCGC- -5'
5939 5' -66.7 NC_001806.1 + 141400 0.66 0.467496
Target:  5'- uGCCCcaGAGCauaaacaCCaGGCCggggCGGCGCGCGg -3'
miRNA:   3'- -CGGGc-CUCGa------GGcCCGG----GCCGUGCGC- -5'
5939 5' -66.7 NC_001806.1 + 64970 0.66 0.458899
Target:  5'- gGCCgGGGGUcCCGGGgCaaacauccaGGgGCGCGg -3'
miRNA:   3'- -CGGgCCUCGaGGCCCgGg--------CCgUGCGC- -5'
5939 5' -66.7 NC_001806.1 + 136343 0.66 0.458899
Target:  5'- gGCCagcgccAGCUcaaaaaacCCGGGgCCGGCGCGCu -3'
miRNA:   3'- -CGGgcc---UCGA--------GGCCCgGGCCGUGCGc -5'
5939 5' -66.7 NC_001806.1 + 139095 0.66 0.458899
Target:  5'- uUCCGGGGCUgCGagaugcugaccGGCUCGcCGCGCGg -3'
miRNA:   3'- cGGGCCUCGAgGC-----------CCGGGCcGUGCGC- -5'
5939 5' -66.7 NC_001806.1 + 139829 0.66 0.458899
Target:  5'- gGCCgGGAGCgCCaGGaccGCCUGcCGCGCGg -3'
miRNA:   3'- -CGGgCCUCGaGG-CC---CGGGCcGUGCGC- -5'
5939 5' -66.7 NC_001806.1 + 115480 0.66 0.456336
Target:  5'- uGCCUGGAGCgccugaucguggagaCGGGUUCGGCG-GUGu -3'
miRNA:   3'- -CGGGCCUCGag-------------GCCCGGGCCGUgCGC- -5'
5939 5' -66.7 NC_001806.1 + 126429 0.66 0.453781
Target:  5'- cCCCGGAggcGUUCCGGGCauuuauCCGGUcgaucccgaagcccaGCGUGc -3'
miRNA:   3'- cGGGCCU---CGAGGCCCG------GGCCG---------------UGCGC- -5'
5939 5' -66.7 NC_001806.1 + 37291 0.66 0.450387
Target:  5'- aGCaCUGGAGaaa-GGGCCgcaGGCGCGUGg -3'
miRNA:   3'- -CG-GGCCUCgaggCCCGGg--CCGUGCGC- -5'
5939 5' -66.7 NC_001806.1 + 115012 0.66 0.450387
Target:  5'- gGCCgCGGGGCUCCcccucuCCUGGacaACGCGg -3'
miRNA:   3'- -CGG-GCCUCGAGGccc---GGGCCg--UGCGC- -5'
5939 5' -66.7 NC_001806.1 + 147295 0.66 0.441962
Target:  5'- cGUCaggGGGGUcCCGGGCCCacccuGGC-CGCGc -3'
miRNA:   3'- -CGGg--CCUCGaGGCCCGGG-----CCGuGCGC- -5'
5939 5' -66.7 NC_001806.1 + 4078 0.66 0.441962
Target:  5'- -gCCGGGGCgcCCGaGGCcucgaaCCGGCGuCGCGc -3'
miRNA:   3'- cgGGCCUCGa-GGC-CCG------GGCCGU-GCGC- -5'
5939 5' -66.7 NC_001806.1 + 133022 0.66 0.441962
Target:  5'- uCuuGGAGCgCCuGGuCCCGGaCACGUGc -3'
miRNA:   3'- cGggCCUCGaGGcCC-GGGCC-GUGCGC- -5'
5939 5' -66.7 NC_001806.1 + 150808 0.66 0.433627
Target:  5'- uCCCgGGAGCUCCGcGGaagaCCCaGGC-CGCc -3'
miRNA:   3'- cGGG-CCUCGAGGC-CC----GGG-CCGuGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.