miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5942 3' -49.7 NC_001806.1 + 25545 0.69 0.972621
Target:  5'- cCGggGAgGGcugggGCcggGGAGGGCUGGGGCc -3'
miRNA:   3'- -GCaaCUgCU-----UGua-CUUCCCGACCUUG- -5'
5942 3' -49.7 NC_001806.1 + 25577 0.69 0.972621
Target:  5'- cCGggGAgGGcugggGCcggGGAGGGCUGGGGCc -3'
miRNA:   3'- -GCaaCUgCU-----UGua-CUUCCCGACCUUG- -5'
5942 3' -49.7 NC_001806.1 + 86716 0.69 0.972621
Target:  5'- cCGUaGAUGAugcGCAUGGaauAGGGCccgGGGGCg -3'
miRNA:   3'- -GCAaCUGCU---UGUACU---UCCCGa--CCUUG- -5'
5942 3' -49.7 NC_001806.1 + 56673 0.7 0.963011
Target:  5'- uCGUUGGgGggUcgGggGGGacgGGGGCc -3'
miRNA:   3'- -GCAACUgCuuGuaCuuCCCga-CCUUG- -5'
5942 3' -49.7 NC_001806.1 + 69495 0.7 0.959342
Target:  5'- gCGggGuCGAACGUGuuuGGGUUGGcGCg -3'
miRNA:   3'- -GCaaCuGCUUGUACuu-CCCGACCuUG- -5'
5942 3' -49.7 NC_001806.1 + 24872 0.7 0.959342
Target:  5'- gCGgcGGCGGGggcCGUGGAGGuGCUGGGGg -3'
miRNA:   3'- -GCaaCUGCUU---GUACUUCC-CGACCUUg -5'
5942 3' -49.7 NC_001806.1 + 20390 0.7 0.959342
Target:  5'- gCGUccGGCGGGCGggaccGggGGGCccgGGGACg -3'
miRNA:   3'- -GCAa-CUGCUUGUa----CuuCCCGa--CCUUG- -5'
5942 3' -49.7 NC_001806.1 + 11799 0.7 0.959342
Target:  5'- gCGggGAUGGugGUcGAGGGGgUGGAGg -3'
miRNA:   3'- -GCaaCUGCUugUA-CUUCCCgACCUUg -5'
5942 3' -49.7 NC_001806.1 + 61260 0.71 0.946858
Target:  5'- uCGUUGACGAccgccccgGCGUaGGAGGuGCUGcGACa -3'
miRNA:   3'- -GCAACUGCU--------UGUA-CUUCC-CGACcUUG- -5'
5942 3' -49.7 NC_001806.1 + 25625 0.72 0.926631
Target:  5'- cCGggGAgGGcugggGCuggGGAGGGCUGGGGCu -3'
miRNA:   3'- -GCaaCUgCU-----UGua-CUUCCCGACCUUG- -5'
5942 3' -49.7 NC_001806.1 + 95281 0.72 0.908721
Target:  5'- gCGUgcUGGCGcGCAUG-GGGGCggGGGGCg -3'
miRNA:   3'- -GCA--ACUGCuUGUACuUCCCGa-CCUUG- -5'
5942 3' -49.7 NC_001806.1 + 71528 0.73 0.888494
Target:  5'- uGUgcgGGCGGGCGgggGggGGGgUGGAAg -3'
miRNA:   3'- gCAa--CUGCUUGUa--CuuCCCgACCUUg -5'
5942 3' -49.7 NC_001806.1 + 25938 0.73 0.866047
Target:  5'- ---cGGCGGGCGUGGgggcGGGGCcgcgGGAGCg -3'
miRNA:   3'- gcaaCUGCUUGUACU----UCCCGa---CCUUG- -5'
5942 3' -49.7 NC_001806.1 + 25522 0.74 0.858095
Target:  5'- ---gGACGcGCcggGGAGGGCUGGGGCc -3'
miRNA:   3'- gcaaCUGCuUGua-CUUCCCGACCUUG- -5'
5942 3' -49.7 NC_001806.1 + 13587 0.74 0.858095
Target:  5'- cCG-UGAuCGGGaggcUGggGGGCUGGAACg -3'
miRNA:   3'- -GCaACU-GCUUgu--ACuuCCCGACCUUG- -5'
5942 3' -49.7 NC_001806.1 + 74960 0.74 0.82413
Target:  5'- uGcgGGCGGACAUGuGGGGGCUgcuGGGGCa -3'
miRNA:   3'- gCaaCUGCUUGUAC-UUCCCGA---CCUUG- -5'
5942 3' -49.7 NC_001806.1 + 76392 0.76 0.727229
Target:  5'- --gUGGCGuGCGUGgcGGcGCUGGAGCg -3'
miRNA:   3'- gcaACUGCuUGUACuuCC-CGACCUUG- -5'
5942 3' -49.7 NC_001806.1 + 89771 0.78 0.664107
Target:  5'- --aUGACGcGCGgggcguggGAGGGGCUGGGGCg -3'
miRNA:   3'- gcaACUGCuUGUa-------CUUCCCGACCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.