miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5942 5' -56.7 NC_001806.1 + 88079 0.68 0.744221
Target:  5'- cUGGcCGCCAGCUCgUUCaggugggauucggggAGGUCGCAGgAa -3'
miRNA:   3'- -ACU-GCGGUCGAG-AGG---------------UCCAGCGUUgU- -5'
5942 5' -56.7 NC_001806.1 + 119527 0.68 0.740318
Target:  5'- gGGCGCCcuGGUUCaCCAGGcCGuCAGCGg -3'
miRNA:   3'- aCUGCGG--UCGAGaGGUCCaGC-GUUGU- -5'
5942 5' -56.7 NC_001806.1 + 134524 0.69 0.720586
Target:  5'- gUGGCGUggcuucgggggCAGUUCUCCAGGUacauCAGCAg -3'
miRNA:   3'- -ACUGCG-----------GUCGAGAGGUCCAgc--GUUGU- -5'
5942 5' -56.7 NC_001806.1 + 37236 0.69 0.720586
Target:  5'- aGACGCCgccgcgaacacAGUUCgUCCAGGcCGC-ACAg -3'
miRNA:   3'- aCUGCGG-----------UCGAG-AGGUCCaGCGuUGU- -5'
5942 5' -56.7 NC_001806.1 + 57679 0.69 0.68841
Target:  5'- aGGCGCCGGggcuugcUUCUCCggucgggAGGUCGCGAa- -3'
miRNA:   3'- aCUGCGGUC-------GAGAGG-------UCCAGCGUUgu -5'
5942 5' -56.7 NC_001806.1 + 4887 0.7 0.680279
Target:  5'- gGAgGCCAGCagagCCAGcuGUCGCGGCGa -3'
miRNA:   3'- aCUgCGGUCGaga-GGUC--CAGCGUUGU- -5'
5942 5' -56.7 NC_001806.1 + 123096 0.7 0.661898
Target:  5'- gGACGCCAGCUgcugaccaaacaUCgcgcacaccggguggCGGGUCGCGGCGg -3'
miRNA:   3'- aCUGCGGUCGAg-----------AG---------------GUCCAGCGUUGU- -5'
5942 5' -56.7 NC_001806.1 + 100807 0.7 0.65985
Target:  5'- aGACGCCGGCga--CAGGUgGCGAa- -3'
miRNA:   3'- aCUGCGGUCGagagGUCCAgCGUUgu -5'
5942 5' -56.7 NC_001806.1 + 21319 0.7 0.645492
Target:  5'- cGACGCCGGCgaggacgCCGGGgacgccgucucgcCGCGACAg -3'
miRNA:   3'- aCUGCGGUCGaga----GGUCCa------------GCGUUGU- -5'
5942 5' -56.7 NC_001806.1 + 3415 0.7 0.63933
Target:  5'- ---gGCCAGCgcCUCCAGGauccCGCGGCAg -3'
miRNA:   3'- acugCGGUCGa-GAGGUCCa---GCGUUGU- -5'
5942 5' -56.7 NC_001806.1 + 143385 0.7 0.628031
Target:  5'- cGACGgcgacaacgcuccCCGGCgg-CCGGGUCGCGGCu -3'
miRNA:   3'- aCUGC-------------GGUCGagaGGUCCAGCGUUGu -5'
5942 5' -56.7 NC_001806.1 + 103135 0.71 0.577885
Target:  5'- aUGGCGgC-GUUCUCCAGGgcaGCGGCAg -3'
miRNA:   3'- -ACUGCgGuCGAGAGGUCCag-CGUUGU- -5'
5942 5' -56.7 NC_001806.1 + 33740 0.75 0.389454
Target:  5'- -cGCGCCGGCUCUgCGGuGUCgGCGGCGg -3'
miRNA:   3'- acUGCGGUCGAGAgGUC-CAG-CGUUGU- -5'
5942 5' -56.7 NC_001806.1 + 102409 0.75 0.36476
Target:  5'- cGACGCCAGCgCUCCGuGuUCGUAGCGg -3'
miRNA:   3'- aCUGCGGUCGaGAGGUcC-AGCGUUGU- -5'
5942 5' -56.7 NC_001806.1 + 126879 0.76 0.356772
Target:  5'- cGGCGCCggGGCUCUCgGGGcCGCAGg- -3'
miRNA:   3'- aCUGCGG--UCGAGAGgUCCaGCGUUgu -5'
5942 5' -56.7 NC_001806.1 + 132095 0.76 0.348909
Target:  5'- -cGCGCC-GCUCUCCuGGUCGCGGa- -3'
miRNA:   3'- acUGCGGuCGAGAGGuCCAGCGUUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.