miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5944 3' -53.4 NC_001806.1 + 151331 0.66 0.977376
Target:  5'- gCUCGggcGGGGGGCu--GUCCGGCcagUCGu -3'
miRNA:   3'- gGGGCa--UCUCCCGuauUAGGCUG---AGC- -5'
5944 3' -53.4 NC_001806.1 + 114590 0.66 0.977376
Target:  5'- cCCCCGgcucuGGGGGCcaacuacuuuucGUcGAUCCGACa-- -3'
miRNA:   3'- -GGGGCau---CUCCCG------------UA-UUAGGCUGagc -5'
5944 3' -53.4 NC_001806.1 + 86062 0.66 0.977376
Target:  5'- uCCCC-UGGGGcGGCGgcGUCUaGCUCGc -3'
miRNA:   3'- -GGGGcAUCUC-CCGUauUAGGcUGAGC- -5'
5944 3' -53.4 NC_001806.1 + 5406 0.66 0.974888
Target:  5'- gUCCCGcGucGGGUcgugGAUCCGugUCGg -3'
miRNA:   3'- -GGGGCaUcuCCCGua--UUAGGCugAGC- -5'
5944 3' -53.4 NC_001806.1 + 38817 0.66 0.974888
Target:  5'- aCCCgGgcGGGGGUggAUAcgCUGGCUgGg -3'
miRNA:   3'- -GGGgCauCUCCCG--UAUuaGGCUGAgC- -5'
5944 3' -53.4 NC_001806.1 + 43579 0.66 0.974629
Target:  5'- gUCCGUGG-GGGCGgcugacaAGUCCGcggauguGCUCGu -3'
miRNA:   3'- gGGGCAUCuCCCGUa------UUAGGC-------UGAGC- -5'
5944 3' -53.4 NC_001806.1 + 105019 0.66 0.972207
Target:  5'- gCCCCGgcGAGcGGCuUGAcCUGGCUa- -3'
miRNA:   3'- -GGGGCauCUC-CCGuAUUaGGCUGAgc -5'
5944 3' -53.4 NC_001806.1 + 62545 0.67 0.966235
Target:  5'- --aCGUAGGGGGCGcGGUCCGcACacaggUCGa -3'
miRNA:   3'- gggGCAUCUCCCGUaUUAGGC-UG-----AGC- -5'
5944 3' -53.4 NC_001806.1 + 88949 0.67 0.962933
Target:  5'- aCCCCGcc-GGGGCGUGGUCC-ACg-- -3'
miRNA:   3'- -GGGGCaucUCCCGUAUUAGGcUGagc -5'
5944 3' -53.4 NC_001806.1 + 20721 0.67 0.955668
Target:  5'- gCCCGccgGGGGGGCGgggggCCGGCg-- -3'
miRNA:   3'- gGGGCa--UCUCCCGUauua-GGCUGagc -5'
5944 3' -53.4 NC_001806.1 + 42244 0.67 0.955668
Target:  5'- gCCCCGc---GGGCGUA--CUGGCUCGu -3'
miRNA:   3'- -GGGGCaucuCCCGUAUuaGGCUGAGC- -5'
5944 3' -53.4 NC_001806.1 + 13505 0.67 0.951696
Target:  5'- gCCCCGcggacaaucUGGGGGGCc---UCCGACggugCGu -3'
miRNA:   3'- -GGGGC---------AUCUCCCGuauuAGGCUGa---GC- -5'
5944 3' -53.4 NC_001806.1 + 68791 0.67 0.951286
Target:  5'- gCCCCGUucgugcaAGAGGGCc---UCCGGuuCUUGg -3'
miRNA:   3'- -GGGGCA-------UCUCCCGuauuAGGCU--GAGC- -5'
5944 3' -53.4 NC_001806.1 + 51196 0.68 0.937897
Target:  5'- gCCCCGauggcccUGGAcGcGGCAUAAcUCCGAC-CGg -3'
miRNA:   3'- -GGGGC-------AUCU-C-CCGUAUU-AGGCUGaGC- -5'
5944 3' -53.4 NC_001806.1 + 4433 0.68 0.933463
Target:  5'- gCCCgGgcGGGGGCGgcGUCCGcC-CGg -3'
miRNA:   3'- -GGGgCauCUCCCGUauUAGGCuGaGC- -5'
5944 3' -53.4 NC_001806.1 + 68944 0.68 0.933463
Target:  5'- cCCCCGagcGGGGGGCuGUGGUCCcGC-CGc -3'
miRNA:   3'- -GGGGCa--UCUCCCG-UAUUAGGcUGaGC- -5'
5944 3' -53.4 NC_001806.1 + 22718 0.69 0.911397
Target:  5'- cCCCCGcGGGGGGCGacgaccCCGACg-- -3'
miRNA:   3'- -GGGGCaUCUCCCGUauua--GGCUGagc -5'
5944 3' -53.4 NC_001806.1 + 142157 0.69 0.898931
Target:  5'- gUCCCGUcGcGGGGUggGGUCCGACguggCGa -3'
miRNA:   3'- -GGGGCAuC-UCCCGuaUUAGGCUGa---GC- -5'
5944 3' -53.4 NC_001806.1 + 46081 0.69 0.898931
Target:  5'- gUCCCGUuuccGGGGCGguuuuGUCCGGCcCGg -3'
miRNA:   3'- -GGGGCAuc--UCCCGUau---UAGGCUGaGC- -5'
5944 3' -53.4 NC_001806.1 + 18603 0.7 0.878491
Target:  5'- --aCGggggAGGGGGCAUccUCCGugUCGg -3'
miRNA:   3'- gggGCa---UCUCCCGUAuuAGGCugAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.