miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5944 5' -57.4 NC_001806.1 + 91409 0.67 0.812249
Target:  5'- -uCGAGGguCGGcccACCgCGCCCCUCgucGGCg -3'
miRNA:   3'- cuGCUUU--GCC---UGGaGCGGGGAGa--CCG- -5'
5944 5' -57.4 NC_001806.1 + 41830 0.67 0.812249
Target:  5'- --gGggGCGGGCgUCaggGCCCCg--GGCg -3'
miRNA:   3'- cugCuuUGCCUGgAG---CGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 70162 0.67 0.812249
Target:  5'- -cCGggGCGG-CCUCgGCCCCacuaugcagaUGGCc -3'
miRNA:   3'- cuGCuuUGCCuGGAG-CGGGGag--------ACCG- -5'
5944 5' -57.4 NC_001806.1 + 72501 0.67 0.812249
Target:  5'- gGGCGAGaucGCGGGCCUgggggaGCCCUgcgUC-GGCg -3'
miRNA:   3'- -CUGCUU---UGCCUGGAg-----CGGGG---AGaCCG- -5'
5944 5' -57.4 NC_001806.1 + 30436 0.67 0.81908
Target:  5'- gGugGgcACGGGCCcucccgcggcgcCGcCCCCUCcGGCg -3'
miRNA:   3'- -CugCuuUGCCUGGa-----------GC-GGGGAGaCCG- -5'
5944 5' -57.4 NC_001806.1 + 150652 0.67 0.820772
Target:  5'- cGGCGGAcgcugguugGcCGGGCCcCGCCgCgCUGGCg -3'
miRNA:   3'- -CUGCUU---------U-GCCUGGaGCGGgGaGACCG- -5'
5944 5' -57.4 NC_001806.1 + 22381 0.67 0.820772
Target:  5'- aGCGuggcGCGGGCCgUGCCCCacCUGGg -3'
miRNA:   3'- cUGCuu--UGCCUGGaGCGGGGa-GACCg -5'
5944 5' -57.4 NC_001806.1 + 84019 0.67 0.829129
Target:  5'- gGGCGuacGCGGAUCUgguccuguUGCUCCUCgccGGCa -3'
miRNA:   3'- -CUGCuu-UGCCUGGA--------GCGGGGAGa--CCG- -5'
5944 5' -57.4 NC_001806.1 + 112805 0.67 0.829129
Target:  5'- gGGCGccAUGGACCUgacguucguccUGCCCCUg-GGCc -3'
miRNA:   3'- -CUGCuuUGCCUGGA-----------GCGGGGAgaCCG- -5'
5944 5' -57.4 NC_001806.1 + 24677 0.67 0.837312
Target:  5'- cGCGAGGCGGugCgCGCcggcccggCCCggUGGCg -3'
miRNA:   3'- cUGCUUUGCCugGaGCG--------GGGagACCG- -5'
5944 5' -57.4 NC_001806.1 + 132863 0.66 0.842934
Target:  5'- gGACGgcGCgguuuugcuuccccGGACUUCGCgCCCagcucCUGGCg -3'
miRNA:   3'- -CUGCuuUG--------------CCUGGAGCG-GGGa----GACCG- -5'
5944 5' -57.4 NC_001806.1 + 2766 0.66 0.845315
Target:  5'- gGGCGcGGGCGGGCCUgCGCCgCggcGGCc -3'
miRNA:   3'- -CUGC-UUUGCCUGGA-GCGGgGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 95306 0.66 0.845315
Target:  5'- gGGCGcgGCGGACg-CGCCCaag-GGCg -3'
miRNA:   3'- -CUGCuuUGCCUGgaGCGGGgagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 68938 0.66 0.845315
Target:  5'- uGACGAcccccgAGCGGGgggcuguggucCCgcCGCCCCUgUUGGCg -3'
miRNA:   3'- -CUGCU------UUGCCU-----------GGa-GCGGGGA-GACCG- -5'
5944 5' -57.4 NC_001806.1 + 3316 0.66 0.845315
Target:  5'- cGGgGAAGCgGGGCC-CGCggguCCCUCcGGCc -3'
miRNA:   3'- -CUgCUUUG-CCUGGaGCG----GGGAGaCCG- -5'
5944 5' -57.4 NC_001806.1 + 65636 0.66 0.85313
Target:  5'- gGGCGAGAgGGgccccggcgGCCUC-CCCCUgggUGGCu -3'
miRNA:   3'- -CUGCUUUgCC---------UGGAGcGGGGAg--ACCG- -5'
5944 5' -57.4 NC_001806.1 + 56612 0.66 0.86075
Target:  5'- aGACGuuuuCGGGCCgCGCgaCC-CUGGCc -3'
miRNA:   3'- -CUGCuuu-GCCUGGaGCGg-GGaGACCG- -5'
5944 5' -57.4 NC_001806.1 + 4473 0.66 0.86075
Target:  5'- cGCGcucGACGGACCcCGCCCgaC-GGCc -3'
miRNA:   3'- cUGCu--UUGCCUGGaGCGGGgaGaCCG- -5'
5944 5' -57.4 NC_001806.1 + 23793 0.66 0.86075
Target:  5'- cACGggGCcgccgGGGgC-CGCCUCUUUGGCc -3'
miRNA:   3'- cUGCuuUG-----CCUgGaGCGGGGAGACCG- -5'
5944 5' -57.4 NC_001806.1 + 86325 0.66 0.86075
Target:  5'- uACGAgGACGGccccgaacGCCUgcaGUCCCUCgGGCa -3'
miRNA:   3'- cUGCU-UUGCC--------UGGAg--CGGGGAGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.