Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5944 | 5' | -57.4 | NC_001806.1 | + | 81871 | 0.7 | 0.639934 |
Target: 5'- --gGGAGCGGGCCaaaacCGuCCCCcCUGGCc -3' miRNA: 3'- cugCUUUGCCUGGa----GC-GGGGaGACCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 84019 | 0.67 | 0.829129 |
Target: 5'- gGGCGuacGCGGAUCUgguccuguUGCUCCUCgccGGCa -3' miRNA: 3'- -CUGCuu-UGCCUGGA--------GCGGGGAGa--CCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 86046 | 0.7 | 0.68011 |
Target: 5'- gGGgGggGCGGG-CUCGuCCCCUggGGCg -3' miRNA: 3'- -CUgCuuUGCCUgGAGC-GGGGAgaCCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 86325 | 0.66 | 0.86075 |
Target: 5'- uACGAgGACGGccccgaacGCCUgcaGUCCCUCgGGCa -3' miRNA: 3'- cUGCU-UUGCC--------UGGAg--CGGGGAGaCCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 87254 | 0.68 | 0.739048 |
Target: 5'- aGugGGGucaaGGAcCCUgGCCCC-CUGGUa -3' miRNA: 3'- -CugCUUug--CCU-GGAgCGGGGaGACCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 89792 | 0.68 | 0.739048 |
Target: 5'- gGGCuGggGCGGACCggcaCGCCCC-CaGGa -3' miRNA: 3'- -CUG-CuuUGCCUGGa---GCGGGGaGaCCg -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 90568 | 0.66 | 0.868171 |
Target: 5'- --gGAccCGGACCgCGCCCUccuguaUCUGGUc -3' miRNA: 3'- cugCUuuGCCUGGaGCGGGG------AGACCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 90842 | 0.7 | 0.670103 |
Target: 5'- aGGCGGucGugGGACC-CGCCgCCg-UGGCa -3' miRNA: 3'- -CUGCU--UugCCUGGaGCGG-GGagACCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 91409 | 0.67 | 0.812249 |
Target: 5'- -uCGAGGguCGGcccACCgCGCCCCUCgucGGCg -3' miRNA: 3'- cuGCUUU--GCC---UGGaGCGGGGAGa--CCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 92099 | 0.66 | 0.867438 |
Target: 5'- cGCGu-GCGGGCCgUGCCCCcugcuucagcuucUCgGGCg -3' miRNA: 3'- cUGCuuUGCCUGGaGCGGGG-------------AGaCCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 92923 | 0.66 | 0.875385 |
Target: 5'- gGGCGggGCGGGCCUgGaggCCgg-GGCc -3' miRNA: 3'- -CUGCuuUGCCUGGAgCgg-GGagaCCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 95306 | 0.66 | 0.845315 |
Target: 5'- gGGCGcgGCGGACg-CGCCCaag-GGCg -3' miRNA: 3'- -CUGCuuUGCCUGgaGCGGGgagaCCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 100923 | 0.71 | 0.609711 |
Target: 5'- uGCGAu-CGGggugcGCCUCGCCCCcCaGGCg -3' miRNA: 3'- cUGCUuuGCC-----UGGAGCGGGGaGaCCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 105980 | 0.68 | 0.758066 |
Target: 5'- gGACGAAcuaaaccugacuACGGcAUCUCuGCCCCUucuucgCUGGUa -3' miRNA: 3'- -CUGCUU------------UGCC-UGGAG-CGGGGA------GACCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 106876 | 0.74 | 0.436175 |
Target: 5'- gGGCGccGAGCaGGGCCcgCGCCCCccucucuUCUGGCg -3' miRNA: 3'- -CUGC--UUUG-CCUGGa-GCGGGG-------AGACCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 109240 | 0.72 | 0.549882 |
Target: 5'- gGGCGggGCGGAauCCUgGgCCCCg--GGCa -3' miRNA: 3'- -CUGCuuUGCCU--GGAgC-GGGGagaCCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 112805 | 0.67 | 0.829129 |
Target: 5'- gGGCGccAUGGACCUgacguucguccUGCCCCUg-GGCc -3' miRNA: 3'- -CUGCuuUGCCUGGA-----------GCGGGGAgaCCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 114182 | 0.67 | 0.807058 |
Target: 5'- aGCGAccccguGACGGACCccgCGCaCCCccugcacccggccaaUCUGGUg -3' miRNA: 3'- cUGCU------UUGCCUGGa--GCG-GGG---------------AGACCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 120847 | 0.66 | 0.875385 |
Target: 5'- uGGCGcAGCugGGACCccggCGgCCC-CUGGCg -3' miRNA: 3'- -CUGCuUUG--CCUGGa---GCgGGGaGACCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 123217 | 0.69 | 0.710851 |
Target: 5'- uGGCGGAAUGGACCgagaugccgcccacgCGgCCCUgcgccgacgcCUGGCc -3' miRNA: 3'- -CUGCUUUGCCUGGa--------------GCgGGGA----------GACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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