Results 61 - 70 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5944 | 5' | -57.4 | NC_001806.1 | + | 125492 | 0.66 | 0.88031 |
Target: 5'- aGACGAAAagcccCGGGCCgcgUCGCCggcacuuucugacgCCUCagGGCc -3' miRNA: 3'- -CUGCUUU-----GCCUGG---AGCGG--------------GGAGa-CCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 125700 | 0.76 | 0.323257 |
Target: 5'- cGCGGGuugcugcGCGGcguCCgCGCCCCUCUGGCc -3' miRNA: 3'- cUGCUU-------UGCCu--GGaGCGGGGAGACCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 132863 | 0.66 | 0.842934 |
Target: 5'- gGACGgcGCgguuuugcuuccccGGACUUCGCgCCCagcucCUGGCg -3' miRNA: 3'- -CUGCuuUG--------------CCUGGAGCG-GGGa----GACCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 135299 | 0.7 | 0.650007 |
Target: 5'- cGACGAAuGCGGcgaUCGCCCCgCUGGa -3' miRNA: 3'- -CUGCUU-UGCCuggAGCGGGGaGACCg -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 135774 | 0.72 | 0.520619 |
Target: 5'- uGGCGAAgcuGCGGcGCC-CGCCCCccCUGGUc -3' miRNA: 3'- -CUGCUU---UGCC-UGGaGCGGGGa-GACCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 137569 | 0.7 | 0.650007 |
Target: 5'- cACGAAGCGcGcCCUgGCCgCCUCcgggGGCg -3' miRNA: 3'- cUGCUUUGC-CuGGAgCGG-GGAGa---CCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 147658 | 0.7 | 0.650007 |
Target: 5'- cGCGggGCGGgcgGCCggcucCGCCCCgggGGCc -3' miRNA: 3'- cUGCuuUGCC---UGGa----GCGGGGagaCCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 150652 | 0.67 | 0.820772 |
Target: 5'- cGGCGGAcgcugguugGcCGGGCCcCGCCgCgCUGGCg -3' miRNA: 3'- -CUGCUU---------U-GCCUGGaGCGGgGaGACCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 150713 | 0.69 | 0.71967 |
Target: 5'- -cCGAGGCGG-CC-CGCCCUgugagggcgggCUGGCu -3' miRNA: 3'- cuGCUUUGCCuGGaGCGGGGa----------GACCG- -5' |
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5944 | 5' | -57.4 | NC_001806.1 | + | 150891 | 0.68 | 0.785759 |
Target: 5'- -cCGGGcACGGGCCUCggGCCCCa--GGCa -3' miRNA: 3'- cuGCUU-UGCCUGGAG--CGGGGagaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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