miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5944 5' -57.4 NC_001806.1 + 92099 0.66 0.867438
Target:  5'- cGCGu-GCGGGCCgUGCCCCcugcuucagcuucUCgGGCg -3'
miRNA:   3'- cUGCuuUGCCUGGaGCGGGG-------------AGaCCG- -5'
5944 5' -57.4 NC_001806.1 + 91409 0.67 0.812249
Target:  5'- -uCGAGGguCGGcccACCgCGCCCCUCgucGGCg -3'
miRNA:   3'- cuGCUUU--GCC---UGGaGCGGGGAGa--CCG- -5'
5944 5' -57.4 NC_001806.1 + 90842 0.7 0.670103
Target:  5'- aGGCGGucGugGGACC-CGCCgCCg-UGGCa -3'
miRNA:   3'- -CUGCU--UugCCUGGaGCGG-GGagACCG- -5'
5944 5' -57.4 NC_001806.1 + 90568 0.66 0.868171
Target:  5'- --gGAccCGGACCgCGCCCUccuguaUCUGGUc -3'
miRNA:   3'- cugCUuuGCCUGGaGCGGGG------AGACCG- -5'
5944 5' -57.4 NC_001806.1 + 89792 0.68 0.739048
Target:  5'- gGGCuGggGCGGACCggcaCGCCCC-CaGGa -3'
miRNA:   3'- -CUG-CuuUGCCUGGa---GCGGGGaGaCCg -5'
5944 5' -57.4 NC_001806.1 + 87254 0.68 0.739048
Target:  5'- aGugGGGucaaGGAcCCUgGCCCC-CUGGUa -3'
miRNA:   3'- -CugCUUug--CCU-GGAgCGGGGaGACCG- -5'
5944 5' -57.4 NC_001806.1 + 86325 0.66 0.86075
Target:  5'- uACGAgGACGGccccgaacGCCUgcaGUCCCUCgGGCa -3'
miRNA:   3'- cUGCU-UUGCC--------UGGAg--CGGGGAGaCCG- -5'
5944 5' -57.4 NC_001806.1 + 86046 0.7 0.68011
Target:  5'- gGGgGggGCGGG-CUCGuCCCCUggGGCg -3'
miRNA:   3'- -CUgCuuUGCCUgGAGC-GGGGAgaCCG- -5'
5944 5' -57.4 NC_001806.1 + 84019 0.67 0.829129
Target:  5'- gGGCGuacGCGGAUCUgguccuguUGCUCCUCgccGGCa -3'
miRNA:   3'- -CUGCuu-UGCCUGGA--------GCGGGGAGa--CCG- -5'
5944 5' -57.4 NC_001806.1 + 81871 0.7 0.639934
Target:  5'- --gGGAGCGGGCCaaaacCGuCCCCcCUGGCc -3'
miRNA:   3'- cugCUUUGCCUGGa----GC-GGGGaGACCG- -5'
5944 5' -57.4 NC_001806.1 + 79391 0.68 0.748606
Target:  5'- uGACGAcuccGGCGGcCCcgCGCCCCUCcuuGCc -3'
miRNA:   3'- -CUGCU----UUGCCuGGa-GCGGGGAGac-CG- -5'
5944 5' -57.4 NC_001806.1 + 77269 0.68 0.748606
Target:  5'- cGACGcgguGGCcggGGACCUgGCCCCaugGGCg -3'
miRNA:   3'- -CUGCu---UUG---CCUGGAgCGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 75280 0.68 0.739048
Target:  5'- aGCGAccCGG-CCUC-CCCC-CUGGCc -3'
miRNA:   3'- cUGCUuuGCCuGGAGcGGGGaGACCG- -5'
5944 5' -57.4 NC_001806.1 + 74062 0.68 0.748606
Target:  5'- gGAgGAGguGCGGACCcagGCCCgUCgGGCg -3'
miRNA:   3'- -CUgCUU--UGCCUGGag-CGGGgAGaCCG- -5'
5944 5' -57.4 NC_001806.1 + 72869 0.69 0.709867
Target:  5'- --gGAGAUGGGCgUCGUCCCggUUGGUc -3'
miRNA:   3'- cugCUUUGCCUGgAGCGGGGa-GACCG- -5'
5944 5' -57.4 NC_001806.1 + 72501 0.67 0.812249
Target:  5'- gGGCGAGaucGCGGGCCUgggggaGCCCUgcgUC-GGCg -3'
miRNA:   3'- -CUGCUU---UGCCUGGAg-----CGGGG---AGaCCG- -5'
5944 5' -57.4 NC_001806.1 + 70162 0.67 0.812249
Target:  5'- -cCGggGCGG-CCUCgGCCCCacuaugcagaUGGCc -3'
miRNA:   3'- cuGCuuUGCCuGGAG-CGGGGag--------ACCG- -5'
5944 5' -57.4 NC_001806.1 + 69954 0.72 0.559753
Target:  5'- -cCGAccCGGGCUUCGUCCCcuacguUCUGGCc -3'
miRNA:   3'- cuGCUuuGCCUGGAGCGGGG------AGACCG- -5'
5944 5' -57.4 NC_001806.1 + 68938 0.66 0.845315
Target:  5'- uGACGAcccccgAGCGGGgggcuguggucCCgcCGCCCCUgUUGGCg -3'
miRNA:   3'- -CUGCU------UUGCCU-----------GGa-GCGGGGA-GACCG- -5'
5944 5' -57.4 NC_001806.1 + 68251 0.66 0.875385
Target:  5'- aACGggGCGGACgaCccgGCgUUUCUGGCc -3'
miRNA:   3'- cUGCuuUGCCUGgaG---CGgGGAGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.