miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5944 5' -57.4 NC_001806.1 + 24677 0.67 0.837312
Target:  5'- cGCGAGGCGGugCgCGCcggcccggCCCggUGGCg -3'
miRNA:   3'- cUGCUUUGCCugGaGCG--------GGGagACCG- -5'
5944 5' -57.4 NC_001806.1 + 112805 0.67 0.829129
Target:  5'- gGGCGccAUGGACCUgacguucguccUGCCCCUg-GGCc -3'
miRNA:   3'- -CUGCuuUGCCUGGA-----------GCGGGGAgaCCG- -5'
5944 5' -57.4 NC_001806.1 + 84019 0.67 0.829129
Target:  5'- gGGCGuacGCGGAUCUgguccuguUGCUCCUCgccGGCa -3'
miRNA:   3'- -CUGCuu-UGCCUGGA--------GCGGGGAGa--CCG- -5'
5944 5' -57.4 NC_001806.1 + 150652 0.67 0.820772
Target:  5'- cGGCGGAcgcugguugGcCGGGCCcCGCCgCgCUGGCg -3'
miRNA:   3'- -CUGCUU---------U-GCCUGGaGCGGgGaGACCG- -5'
5944 5' -57.4 NC_001806.1 + 22381 0.67 0.820772
Target:  5'- aGCGuggcGCGGGCCgUGCCCCacCUGGg -3'
miRNA:   3'- cUGCuu--UGCCUGGaGCGGGGa-GACCg -5'
5944 5' -57.4 NC_001806.1 + 30436 0.67 0.81908
Target:  5'- gGugGgcACGGGCCcucccgcggcgcCGcCCCCUCcGGCg -3'
miRNA:   3'- -CugCuuUGCCUGGa-----------GC-GGGGAGaCCG- -5'
5944 5' -57.4 NC_001806.1 + 41830 0.67 0.812249
Target:  5'- --gGggGCGGGCgUCaggGCCCCg--GGCg -3'
miRNA:   3'- cugCuuUGCCUGgAG---CGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 91409 0.67 0.812249
Target:  5'- -uCGAGGguCGGcccACCgCGCCCCUCgucGGCg -3'
miRNA:   3'- cuGCUUU--GCC---UGGaGCGGGGAGa--CCG- -5'
5944 5' -57.4 NC_001806.1 + 72501 0.67 0.812249
Target:  5'- gGGCGAGaucGCGGGCCUgggggaGCCCUgcgUC-GGCg -3'
miRNA:   3'- -CUGCUU---UGCCUGGAg-----CGGGG---AGaCCG- -5'
5944 5' -57.4 NC_001806.1 + 70162 0.67 0.812249
Target:  5'- -cCGggGCGG-CCUCgGCCCCacuaugcagaUGGCc -3'
miRNA:   3'- cuGCuuUGCCuGGAG-CGGGGag--------ACCG- -5'
5944 5' -57.4 NC_001806.1 + 114182 0.67 0.807058
Target:  5'- aGCGAccccguGACGGACCccgCGCaCCCccugcacccggccaaUCUGGUg -3'
miRNA:   3'- cUGCU------UUGCCUGGa--GCG-GGG---------------AGACCG- -5'
5944 5' -57.4 NC_001806.1 + 22062 0.67 0.803567
Target:  5'- cGGCGc--CGGGCCccCGCCCCcggGGCg -3'
miRNA:   3'- -CUGCuuuGCCUGGa-GCGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 150891 0.68 0.785759
Target:  5'- -cCGGGcACGGGCCUCggGCCCCa--GGCa -3'
miRNA:   3'- cuGCUU-UGCCUGGAG--CGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 24900 0.68 0.785759
Target:  5'- gGGCgGAGGCGGGCUUggccaCGCCCCcgC-GGCg -3'
miRNA:   3'- -CUG-CUUUGCCUGGA-----GCGGGGa-GaCCG- -5'
5944 5' -57.4 NC_001806.1 + 24306 0.68 0.776651
Target:  5'- cGGCGgcGCgGGACCUgCGCCgCacggugCUGGCc -3'
miRNA:   3'- -CUGCuuUG-CCUGGA-GCGGgGa-----GACCG- -5'
5944 5' -57.4 NC_001806.1 + 29857 0.68 0.767416
Target:  5'- cGCGGcuCGGACagCGCCCCcCUcGGCg -3'
miRNA:   3'- cUGCUuuGCCUGgaGCGGGGaGA-CCG- -5'
5944 5' -57.4 NC_001806.1 + 105980 0.68 0.758066
Target:  5'- gGACGAAcuaaaccugacuACGGcAUCUCuGCCCCUucuucgCUGGUa -3'
miRNA:   3'- -CUGCUU------------UGCC-UGGAG-CGGGGA------GACCG- -5'
5944 5' -57.4 NC_001806.1 + 79391 0.68 0.748606
Target:  5'- uGACGAcuccGGCGGcCCcgCGCCCCUCcuuGCc -3'
miRNA:   3'- -CUGCU----UUGCCuGGa-GCGGGGAGac-CG- -5'
5944 5' -57.4 NC_001806.1 + 74062 0.68 0.748606
Target:  5'- gGAgGAGguGCGGACCcagGCCCgUCgGGCg -3'
miRNA:   3'- -CUgCUU--UGCCUGGag-CGGGgAGaCCG- -5'
5944 5' -57.4 NC_001806.1 + 50676 0.68 0.748606
Target:  5'- gGACGAcGCGGcgGCCacgCGCgCCauUCUGGCc -3'
miRNA:   3'- -CUGCUuUGCC--UGGa--GCGgGG--AGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.