miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5945 3' -67.2 NC_001806.1 + 24472 0.66 0.470897
Target:  5'- cCCggacaCGCCGGuGCccaugUCCCCGCGCGa -3'
miRNA:   3'- aGGa----GCGGCC-CGccg--AGGGGCGCGCc -5'
5945 3' -67.2 NC_001806.1 + 22269 0.66 0.470897
Target:  5'- ----gGCCaugGGGUGGCUCcagaaCCCGCGCGu -3'
miRNA:   3'- aggagCGG---CCCGCCGAG-----GGGCGCGCc -5'
5945 3' -67.2 NC_001806.1 + 21955 0.66 0.470897
Target:  5'- cCCUUcacgGCCGGGCaGC-CCCgGCG-GGu -3'
miRNA:   3'- aGGAG----CGGCCCGcCGaGGGgCGCgCC- -5'
5945 3' -67.2 NC_001806.1 + 141417 0.66 0.470897
Target:  5'- aCCagGCCgGGGCGGCgcgcggCCaaCCG-GCGGa -3'
miRNA:   3'- aGGagCGG-CCCGCCGa-----GG--GGCgCGCC- -5'
5945 3' -67.2 NC_001806.1 + 21768 0.66 0.470897
Target:  5'- ---cCGUCGGGCGGggUCCgucgaGCGCGGc -3'
miRNA:   3'- aggaGCGGCCCGCCgaGGGg----CGCGCC- -5'
5945 3' -67.2 NC_001806.1 + 147742 0.66 0.470897
Target:  5'- gCCgCGCgGgGGCGcGCgggUCCCGaCGCGGc -3'
miRNA:   3'- aGGaGCGgC-CCGC-CGa--GGGGC-GCGCC- -5'
5945 3' -67.2 NC_001806.1 + 22769 0.66 0.462335
Target:  5'- aCgaCGCCGGGCGccGCgcccaggCCggCCGCGUGGc -3'
miRNA:   3'- aGgaGCGGCCCGC--CGa------GG--GGCGCGCC- -5'
5945 3' -67.2 NC_001806.1 + 22887 0.66 0.453855
Target:  5'- -gCUgGCCGGGgccCGGCccgccagCCCCcCGCGGc -3'
miRNA:   3'- agGAgCGGCCC---GCCGa------GGGGcGCGCC- -5'
5945 3' -67.2 NC_001806.1 + 6064 0.66 0.453855
Target:  5'- cUCCgCGCCGgccccGGgGGCgggCCCGgGCGGc -3'
miRNA:   3'- -AGGaGCGGC-----CCgCCGag-GGGCgCGCC- -5'
5945 3' -67.2 NC_001806.1 + 23800 0.66 0.453855
Target:  5'- ---cCGCCGGGggccgccucuuUGGCcCCCUGCGCGc -3'
miRNA:   3'- aggaGCGGCCC-----------GCCGaGGGGCGCGCc -5'
5945 3' -67.2 NC_001806.1 + 29936 0.66 0.453855
Target:  5'- ----gGCgGGGCGGCUCCCgccaGuCGCGa -3'
miRNA:   3'- aggagCGgCCCGCCGAGGGg---C-GCGCc -5'
5945 3' -67.2 NC_001806.1 + 25915 0.66 0.453855
Target:  5'- ----gGuCCGGGCGGCgugCgCgCGCGCGGc -3'
miRNA:   3'- aggagC-GGCCCGCCGa--GgG-GCGCGCC- -5'
5945 3' -67.2 NC_001806.1 + 100733 0.66 0.44546
Target:  5'- cUCCaCGCCGGGCgcccaGGUgcgCCCggacaGCGCGa -3'
miRNA:   3'- -AGGaGCGGCCCG-----CCGa--GGGg----CGCGCc -5'
5945 3' -67.2 NC_001806.1 + 24508 0.66 0.44546
Target:  5'- ---cCGCCGGGcCGuGCUgCCgGCGCuGGa -3'
miRNA:   3'- aggaGCGGCCC-GC-CGAgGGgCGCG-CC- -5'
5945 3' -67.2 NC_001806.1 + 5348 0.66 0.44546
Target:  5'- gCUUCGuCCGcGuauCGGCgUCCCgGCGCGGc -3'
miRNA:   3'- aGGAGC-GGC-Cc--GCCG-AGGGgCGCGCC- -5'
5945 3' -67.2 NC_001806.1 + 15720 0.66 0.437152
Target:  5'- ---aCGgCGGGCGauuGUUCCcggCCGCGCGGg -3'
miRNA:   3'- aggaGCgGCCCGC---CGAGG---GGCGCGCC- -5'
5945 3' -67.2 NC_001806.1 + 144572 0.66 0.437152
Target:  5'- uUCCgggcgCGuCCGGGUgccgcGGCUCUCCGgGCc- -3'
miRNA:   3'- -AGGa----GC-GGCCCG-----CCGAGGGGCgCGcc -5'
5945 3' -67.2 NC_001806.1 + 21803 0.66 0.437152
Target:  5'- gCC-C-CCGGGCGGaCgccgcCCCCGCcCGGg -3'
miRNA:   3'- aGGaGcGGCCCGCC-Ga----GGGGCGcGCC- -5'
5945 3' -67.2 NC_001806.1 + 106702 0.66 0.437152
Target:  5'- uUCC-CGggcccCCGGGCGGC-CCCCGguauCGGg -3'
miRNA:   3'- -AGGaGC-----GGCCCGCCGaGGGGCgc--GCC- -5'
5945 3' -67.2 NC_001806.1 + 50666 0.66 0.428935
Target:  5'- aCCggCGCCGGgacgacGCGGCggCCaCGCGCGc -3'
miRNA:   3'- aGGa-GCGGCC------CGCCGagGG-GCGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.