Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5945 | 5' | -57.2 | NC_001806.1 | + | 63633 | 0.66 | 0.860392 |
Target: 5'- uUCUCGCCGUccAGGUGGCGAauCAGGc -3' miRNA: 3'- -AGGGCGGCGauUCCGCUGCUc-GUUCu -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 68964 | 0.66 | 0.863413 |
Target: 5'- gUCCCGCCGCcccuguuGGCGcaguuucagcacacCGuGCGGGAg -3' miRNA: 3'- -AGGGCGGCGauu----CCGCu-------------GCuCGUUCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 69027 | 0.67 | 0.80263 |
Target: 5'- aUUCCGCCGCUcGAGGCcaacaaGAUGGuucgcagccGCGAGGa -3' miRNA: 3'- -AGGGCGGCGA-UUCCG------CUGCU---------CGUUCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 72822 | 0.75 | 0.365722 |
Target: 5'- cCCCGCCGCaGAGGCGGcCGAagAAGAu -3' miRNA: 3'- aGGGCGGCGaUUCCGCU-GCUcgUUCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 73984 | 0.7 | 0.657718 |
Target: 5'- gCCCGCCccgGCcGGGGCGGCcccGCAGGGg -3' miRNA: 3'- aGGGCGG---CGaUUCCGCUGcu-CGUUCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 77495 | 0.66 | 0.860392 |
Target: 5'- cUgCGCCGCcGGGGCGaggcguaccuGCGAGUGAGc -3' miRNA: 3'- aGgGCGGCGaUUCCGC----------UGCUCGUUCu -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 78374 | 0.7 | 0.63741 |
Target: 5'- gUCCCGCCcaggcGCUGGcGGCGGUGAGCGu-- -3' miRNA: 3'- -AGGGCGG-----CGAUU-CCGCUGCUCGUucu -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 82670 | 0.74 | 0.444926 |
Target: 5'- -aCCGCCGCgaaucuuucccgcuuGGCGGCGAGCAGc- -3' miRNA: 3'- agGGCGGCGauu------------CCGCUGCUCGUUcu -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 88965 | 0.69 | 0.707984 |
Target: 5'- gUCCaCGCCGCcccacAGGCG-CGAGCGc-- -3' miRNA: 3'- -AGG-GCGGCGau---UCCGCuGCUCGUucu -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 90998 | 0.69 | 0.698023 |
Target: 5'- cCCCGCggggcgggCGCgacGGCGGCG-GCAAGGg -3' miRNA: 3'- aGGGCG--------GCGauuCCGCUGCuCGUUCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 94804 | 0.75 | 0.381917 |
Target: 5'- gCCCGgaCGCggGGGGCGACGGGCAGc- -3' miRNA: 3'- aGGGCg-GCGa-UUCCGCUGCUCGUUcu -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 95002 | 0.67 | 0.80263 |
Target: 5'- aCCUGaCCGCgcuGGcGCGGCGcgaguugcAGCAGGAg -3' miRNA: 3'- aGGGC-GGCGau-UC-CGCUGC--------UCGUUCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 95060 | 0.7 | 0.657718 |
Target: 5'- -aCUGgCGCUGuucGGGCGGCGGGC-GGAg -3' miRNA: 3'- agGGCgGCGAU---UCCGCUGCUCGuUCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 96364 | 0.66 | 0.875167 |
Target: 5'- gUCCCGCCauGCgccAGGGCGccccCGcGCGGGGg -3' miRNA: 3'- -AGGGCGG--CGa--UUCCGCu---GCuCGUUCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 96489 | 0.67 | 0.793707 |
Target: 5'- gUCgCgGCCGCgacccAGGCGGCGAaCGGGGg -3' miRNA: 3'- -AG-GgCGGCGau---UCCGCUGCUcGUUCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 100380 | 0.71 | 0.566596 |
Target: 5'- cUCCCGUCGCc-GGGCGGCGcgggGGCcGGGg -3' miRNA: 3'- -AGGGCGGCGauUCCGCUGC----UCGuUCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 103197 | 0.66 | 0.851133 |
Target: 5'- cUCCGCCGCcgucucccggggGAGGUuaaaGACGGGCGAc- -3' miRNA: 3'- aGGGCGGCGa-----------UUCCG----CUGCUCGUUcu -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 103810 | 0.76 | 0.342331 |
Target: 5'- -gCCGCCGCggcGGCGACGGGCucgcuGGGu -3' miRNA: 3'- agGGCGGCGauuCCGCUGCUCGu----UCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 106787 | 0.69 | 0.677944 |
Target: 5'- cUCCGCCGCguGGGCGGCuacccggaggaGGGCAcGAa -3' miRNA: 3'- aGGGCGGCGauUCCGCUG-----------CUCGUuCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 106862 | 0.66 | 0.875167 |
Target: 5'- uUCUCGggggaCGC--GGGCGcCGAGCAGGGc -3' miRNA: 3'- -AGGGCg----GCGauUCCGCuGCUCGUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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