miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5945 5' -57.2 NC_001806.1 + 95002 0.67 0.80263
Target:  5'- aCCUGaCCGCgcuGGcGCGGCGcgaguugcAGCAGGAg -3'
miRNA:   3'- aGGGC-GGCGau-UC-CGCUGC--------UCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 94804 0.75 0.381917
Target:  5'- gCCCGgaCGCggGGGGCGACGGGCAGc- -3'
miRNA:   3'- aGGGCg-GCGa-UUCCGCUGCUCGUUcu -5'
5945 5' -57.2 NC_001806.1 + 90998 0.69 0.698023
Target:  5'- cCCCGCggggcgggCGCgacGGCGGCG-GCAAGGg -3'
miRNA:   3'- aGGGCG--------GCGauuCCGCUGCuCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 88965 0.69 0.707984
Target:  5'- gUCCaCGCCGCcccacAGGCG-CGAGCGc-- -3'
miRNA:   3'- -AGG-GCGGCGau---UCCGCuGCUCGUucu -5'
5945 5' -57.2 NC_001806.1 + 82670 0.74 0.444926
Target:  5'- -aCCGCCGCgaaucuuucccgcuuGGCGGCGAGCAGc- -3'
miRNA:   3'- agGGCGGCGauu------------CCGCUGCUCGUUcu -5'
5945 5' -57.2 NC_001806.1 + 78374 0.7 0.63741
Target:  5'- gUCCCGCCcaggcGCUGGcGGCGGUGAGCGu-- -3'
miRNA:   3'- -AGGGCGG-----CGAUU-CCGCUGCUCGUucu -5'
5945 5' -57.2 NC_001806.1 + 77495 0.66 0.860392
Target:  5'- cUgCGCCGCcGGGGCGaggcguaccuGCGAGUGAGc -3'
miRNA:   3'- aGgGCGGCGaUUCCGC----------UGCUCGUUCu -5'
5945 5' -57.2 NC_001806.1 + 73984 0.7 0.657718
Target:  5'- gCCCGCCccgGCcGGGGCGGCcccGCAGGGg -3'
miRNA:   3'- aGGGCGG---CGaUUCCGCUGcu-CGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 72822 0.75 0.365722
Target:  5'- cCCCGCCGCaGAGGCGGcCGAagAAGAu -3'
miRNA:   3'- aGGGCGGCGaUUCCGCU-GCUcgUUCU- -5'
5945 5' -57.2 NC_001806.1 + 69027 0.67 0.80263
Target:  5'- aUUCCGCCGCUcGAGGCcaacaaGAUGGuucgcagccGCGAGGa -3'
miRNA:   3'- -AGGGCGGCGA-UUCCG------CUGCU---------CGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 68964 0.66 0.863413
Target:  5'- gUCCCGCCGCcccuguuGGCGcaguuucagcacacCGuGCGGGAg -3'
miRNA:   3'- -AGGGCGGCGauu----CCGCu-------------GCuCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 63633 0.66 0.860392
Target:  5'- uUCUCGCCGUccAGGUGGCGAauCAGGc -3'
miRNA:   3'- -AGGGCGGCGauUCCGCUGCUc-GUUCu -5'
5945 5' -57.2 NC_001806.1 + 56842 0.7 0.627246
Target:  5'- -aCCGCCGCggccAGGGCGGCcgcGGCGGGc -3'
miRNA:   3'- agGGCGGCGa---UUCCGCUGc--UCGUUCu -5'
5945 5' -57.2 NC_001806.1 + 56708 0.68 0.765169
Target:  5'- cCCCggGUCGCUcuggguccuccggGGGGCGGCGGGaaaGAGAc -3'
miRNA:   3'- aGGG--CGGCGA-------------UUCCGCUGCUCg--UUCU- -5'
5945 5' -57.2 NC_001806.1 + 51575 0.67 0.80263
Target:  5'- cUUCgGCCGCcacccAGGCGcUGGGCGAGGu -3'
miRNA:   3'- -AGGgCGGCGau---UCCGCuGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 49932 0.68 0.747107
Target:  5'- cCCCGCC-C--AGGCGAUGAGCu--- -3'
miRNA:   3'- aGGGCGGcGauUCCGCUGCUCGuucu -5'
5945 5' -57.2 NC_001806.1 + 49156 0.66 0.841593
Target:  5'- gCCCGUgGCggacgagccagcGGGCGAUGGGguGGGg -3'
miRNA:   3'- aGGGCGgCGau----------UCCGCUGCUCguUCU- -5'
5945 5' -57.2 NC_001806.1 + 48899 0.72 0.556608
Target:  5'- uUCCCauuugGCCggggGCUGGGGCGGCGGGUAGc- -3'
miRNA:   3'- -AGGG-----CGG----CGAUUCCGCUGCUCGUUcu -5'
5945 5' -57.2 NC_001806.1 + 47045 0.67 0.814866
Target:  5'- cCCgCGCCGUc-GGGCGucccacacucucuggGCGGGCGGGGa -3'
miRNA:   3'- aGG-GCGGCGauUCCGC---------------UGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 46217 0.71 0.596806
Target:  5'- cCCCGCgGCcccGGCGGCGgagaccacccgcGGCAGGAa -3'
miRNA:   3'- aGGGCGgCGauuCCGCUGC------------UCGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.