miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5945 5' -57.2 NC_001806.1 + 147500 0.66 0.875167
Target:  5'- --gCGCCGgagGGGGCGGCGccGCGGGAg -3'
miRNA:   3'- aggGCGGCga-UUCCGCUGCu-CGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 106862 0.66 0.875167
Target:  5'- uUCUCGggggaCGC--GGGCGcCGAGCAGGGc -3'
miRNA:   3'- -AGGGCg----GCGauUCCGCuGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 4333 0.66 0.875167
Target:  5'- -aCCGCCGCgcGGGCccGGCGGcGCucGAu -3'
miRNA:   3'- agGGCGGCGauUCCG--CUGCU-CGuuCU- -5'
5945 5' -57.2 NC_001806.1 + 23044 0.66 0.875167
Target:  5'- aCCUGCgCGUggccGGCGGC-AGCGAGGc -3'
miRNA:   3'- aGGGCG-GCGauu-CCGCUGcUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 33615 0.66 0.875167
Target:  5'- -aCCGgCGC-GGGGCGGgGGGCcGGAu -3'
miRNA:   3'- agGGCgGCGaUUCCGCUgCUCGuUCU- -5'
5945 5' -57.2 NC_001806.1 + 147174 0.66 0.852696
Target:  5'- cCCCGCC-CgagGAGGCGGaagcgGAGgAGGAc -3'
miRNA:   3'- aGGGCGGcGa--UUCCGCUg----CUCgUUCU- -5'
5945 5' -57.2 NC_001806.1 + 5745 0.66 0.852696
Target:  5'- gUUCCGCaUGCUaacGAGGa-ACGGGCAGGGg -3'
miRNA:   3'- -AGGGCG-GCGA---UUCCgcUGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 51575 0.67 0.80263
Target:  5'- cUUCgGCCGCcacccAGGCGcUGGGCGAGGu -3'
miRNA:   3'- -AGGgCGGCGau---UCCGCuGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 95002 0.67 0.80263
Target:  5'- aCCUGaCCGCgcuGGcGCGGCGcgaguugcAGCAGGAg -3'
miRNA:   3'- aGGGC-GGCGau-UC-CGCUGC--------UCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 69027 0.67 0.80263
Target:  5'- aUUCCGCCGCUcGAGGCcaacaaGAUGGuucgcagccGCGAGGa -3'
miRNA:   3'- -AGGGCGGCGA-UUCCG------CUGCU---------CGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 151436 0.67 0.811401
Target:  5'- gCCCaCCgGCggGGGGCGGCG-GCGGGGc -3'
miRNA:   3'- aGGGcGG-CGa-UUCCGCUGCuCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 142157 0.67 0.811401
Target:  5'- gUCCCGUCGCggggUGGGGUccGACGuGGCGAuGAu -3'
miRNA:   3'- -AGGGCGGCG----AUUCCG--CUGC-UCGUU-CU- -5'
5945 5' -57.2 NC_001806.1 + 47045 0.67 0.814866
Target:  5'- cCCgCGCCGUc-GGGCGucccacacucucuggGCGGGCGGGGa -3'
miRNA:   3'- aGG-GCGGCGauUCCGC---------------UGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 21844 0.67 0.818304
Target:  5'- cUCCgagGCCGCgcccaagccccGGGCGGCG-GCGAGGa -3'
miRNA:   3'- -AGGg--CGGCGau---------UCCGCUGCuCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 21304 0.67 0.820012
Target:  5'- cCCCGCgGC--GGGCaccGACGccGGCGAGGa -3'
miRNA:   3'- aGGGCGgCGauUCCG---CUGC--UCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 49156 0.66 0.841593
Target:  5'- gCCCGUgGCggacgagccagcGGGCGAUGGGguGGGg -3'
miRNA:   3'- aGGGCGgCGau----------UCCGCUGCUCguUCU- -5'
5945 5' -57.2 NC_001806.1 + 41450 0.66 0.844004
Target:  5'- -gCCGCCGCUucGGCGgacACGAccgcuucggccagGCGAGc -3'
miRNA:   3'- agGGCGGCGAuuCCGC---UGCU-------------CGUUCu -5'
5945 5' -57.2 NC_001806.1 + 22716 0.66 0.844804
Target:  5'- cUCCC-CCGCggGGGGCGACGAc----- -3'
miRNA:   3'- -AGGGcGGCGa-UUCCGCUGCUcguucu -5'
5945 5' -57.2 NC_001806.1 + 4654 0.66 0.844804
Target:  5'- cUCCGCgGCggcuGGGcCGGCGGGCGcGGc -3'
miRNA:   3'- aGGGCGgCGau--UCC-GCUGCUCGUuCU- -5'
5945 5' -57.2 NC_001806.1 + 103197 0.66 0.851133
Target:  5'- cUCCGCCGCcgucucccggggGAGGUuaaaGACGGGCGAc- -3'
miRNA:   3'- aGGGCGGCGa-----------UUCCG----CUGCUCGUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.