miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5945 5' -57.2 NC_001806.1 + 49156 0.66 0.841593
Target:  5'- gCCCGUgGCggacgagccagcGGGCGAUGGGguGGGg -3'
miRNA:   3'- aGGGCGgCGau----------UCCGCUGCUCguUCU- -5'
5945 5' -57.2 NC_001806.1 + 21304 0.67 0.820012
Target:  5'- cCCCGCgGC--GGGCaccGACGccGGCGAGGa -3'
miRNA:   3'- aGGGCGgCGauUCCG---CUGC--UCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 21844 0.67 0.818304
Target:  5'- cUCCgagGCCGCgcccaagccccGGGCGGCG-GCGAGGa -3'
miRNA:   3'- -AGGg--CGGCGau---------UCCGCUGCuCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 47045 0.67 0.814866
Target:  5'- cCCgCGCCGUc-GGGCGucccacacucucuggGCGGGCGGGGa -3'
miRNA:   3'- aGG-GCGGCGauUCCGC---------------UGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 142157 0.67 0.811401
Target:  5'- gUCCCGUCGCggggUGGGGUccGACGuGGCGAuGAu -3'
miRNA:   3'- -AGGGCGGCG----AUUCCG--CUGC-UCGUU-CU- -5'
5945 5' -57.2 NC_001806.1 + 151436 0.67 0.811401
Target:  5'- gCCCaCCgGCggGGGGCGGCG-GCGGGGc -3'
miRNA:   3'- aGGGcGG-CGa-UUCCGCUGCuCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 51575 0.67 0.80263
Target:  5'- cUUCgGCCGCcacccAGGCGcUGGGCGAGGu -3'
miRNA:   3'- -AGGgCGGCGau---UCCGCuGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 95002 0.67 0.80263
Target:  5'- aCCUGaCCGCgcuGGcGCGGCGcgaguugcAGCAGGAg -3'
miRNA:   3'- aGGGC-GGCGau-UC-CGCUGC--------UCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 69027 0.67 0.80263
Target:  5'- aUUCCGCCGCUcGAGGCcaacaaGAUGGuucgcagccGCGAGGa -3'
miRNA:   3'- -AGGGCGGCGA-UUCCG------CUGCU---------CGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 96489 0.67 0.793707
Target:  5'- gUCgCgGCCGCgacccAGGCGGCGAaCGGGGg -3'
miRNA:   3'- -AG-GgCGGCGau---UCCGCUGCUcGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 5101 0.68 0.78464
Target:  5'- gCCCGUCGgUGGGGCccGGgGAGCcGGGg -3'
miRNA:   3'- aGGGCGGCgAUUCCG--CUgCUCGuUCU- -5'
5945 5' -57.2 NC_001806.1 + 142012 0.68 0.766108
Target:  5'- aCCaGCCuCUAGGGCGGCGAGgAGc- -3'
miRNA:   3'- aGGgCGGcGAUUCCGCUGCUCgUUcu -5'
5945 5' -57.2 NC_001806.1 + 23267 0.68 0.766108
Target:  5'- cUCCGCCGCgccgcggGAGG-GGCGcaagcGCAAGAg -3'
miRNA:   3'- aGGGCGGCGa------UUCCgCUGCu----CGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 56708 0.68 0.765169
Target:  5'- cCCCggGUCGCUcuggguccuccggGGGGCGGCGGGaaaGAGAc -3'
miRNA:   3'- aGGG--CGGCGA-------------UUCCGCUGCUCg--UUCU- -5'
5945 5' -57.2 NC_001806.1 + 137579 0.68 0.756662
Target:  5'- gCCCugGCCGCcuccgGGGGCGAgGAGUugcGGAa -3'
miRNA:   3'- aGGG--CGGCGa----UUCCGCUgCUCGu--UCU- -5'
5945 5' -57.2 NC_001806.1 + 36203 0.68 0.756662
Target:  5'- cUCUGCCGCgcGGGCGGCcaugccgcugGAGCugauGGAg -3'
miRNA:   3'- aGGGCGGCGauUCCGCUG----------CUCGu---UCU- -5'
5945 5' -57.2 NC_001806.1 + 49932 0.68 0.747107
Target:  5'- cCCCGCC-C--AGGCGAUGAGCu--- -3'
miRNA:   3'- aGGGCGGcGauUCCGCUGCUCGuucu -5'
5945 5' -57.2 NC_001806.1 + 147455 0.68 0.733566
Target:  5'- -aCCGCCGCcuccugcucgacaGAGGCGGCggagggGAGCGGGGc -3'
miRNA:   3'- agGGCGGCGa------------UUCCGCUG------CUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 88965 0.69 0.707984
Target:  5'- gUCCaCGCCGCcccacAGGCG-CGAGCGc-- -3'
miRNA:   3'- -AGG-GCGGCGau---UCCGCuGCUCGUucu -5'
5945 5' -57.2 NC_001806.1 + 150704 0.69 0.698023
Target:  5'- gUCCCGCCcCcGAGGCGGCccgcccugugaGGGCGGGc -3'
miRNA:   3'- -AGGGCGGcGaUUCCGCUG-----------CUCGUUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.