Results 61 - 80 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5946 | 3' | -52.5 | NC_001806.1 | + | 147689 | 0.71 | 0.84207 |
Target: 5'- --gCCGGGGCGCGGGGGcGGGccCCGGa -3' miRNA: 3'- gaaGGUUUUGCGCUCCU-CCUacGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 33641 | 0.71 | 0.850203 |
Target: 5'- --cCCAcacGGGCGgGGGGGGGGUGUCGcGg -3' miRNA: 3'- gaaGGU---UUUGCgCUCCUCCUACGGC-C- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 66649 | 0.71 | 0.850203 |
Target: 5'- -cUCCAAcccGCGCG-GGGGGA-GCUGGc -3' miRNA: 3'- gaAGGUUu--UGCGCuCCUCCUaCGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 87010 | 0.71 | 0.873354 |
Target: 5'- gCUUUCGcAugGCGAgccagucccgcaGGAGGAUGCUGa -3' miRNA: 3'- -GAAGGUuUugCGCU------------CCUCCUACGGCc -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 113390 | 0.71 | 0.873354 |
Target: 5'- gUUCCGGGACGCccGGGGccuGGA-GCUGGg -3' miRNA: 3'- gAAGGUUUUGCG--CUCCu--CCUaCGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 85748 | 0.72 | 0.83374 |
Target: 5'- -gUCCGGAgccGCGCGGccacgucguccGGGGGGUGCCa- -3' miRNA: 3'- gaAGGUUU---UGCGCU-----------CCUCCUACGGcc -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 100202 | 0.72 | 0.832896 |
Target: 5'- --cCCGGgauacugaugggcGACGUGGGGAGGGuaaUGCUGGg -3' miRNA: 3'- gaaGGUU-------------UUGCGCUCCUCCU---ACGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 71746 | 0.72 | 0.816521 |
Target: 5'- -cUCCAcgaugGAACGCGGGGGGGAUcGCg-- -3' miRNA: 3'- gaAGGU-----UUUGCGCUCCUCCUA-CGgcc -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 76055 | 0.72 | 0.816521 |
Target: 5'- gCUUCUGcgGCugGCGGGGGGGcUGCUGGa -3' miRNA: 3'- -GAAGGUuuUG--CGCUCCUCCuACGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 25519 | 0.72 | 0.816521 |
Target: 5'- ---gCGGGACGCGccgGGGAGGGcugggGCCGGg -3' miRNA: 3'- gaagGUUUUGCGC---UCCUCCUa----CGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 22138 | 0.72 | 0.816521 |
Target: 5'- --cCCGAGGCG-GAGGAGGcgcgacGCCGGu -3' miRNA: 3'- gaaGGUUUUGCgCUCCUCCua----CGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 11428 | 0.72 | 0.807648 |
Target: 5'- --gCCGGGAUuuGGGGGGGGUGCuCGGa -3' miRNA: 3'- gaaGGUUUUGcgCUCCUCCUACG-GCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 28170 | 0.73 | 0.761005 |
Target: 5'- --cCCA--GCGCGAGGugAGGG-GCCGGg -3' miRNA: 3'- gaaGGUuuUGCGCUCC--UCCUaCGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 84423 | 0.74 | 0.711423 |
Target: 5'- --cCCGAGACGCagcccGGGGAcGGggGCCGGu -3' miRNA: 3'- gaaGGUUUUGCG-----CUCCU-CCuaCGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 2983 | 0.74 | 0.711423 |
Target: 5'- --cCCGcgGCGCGGGGAGGcgGCggCGGc -3' miRNA: 3'- gaaGGUuuUGCGCUCCUCCuaCG--GCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 145618 | 0.75 | 0.677672 |
Target: 5'- gUUCCuaaa-GCGAGGAuacggaggaguggcGGGUGCCGGg -3' miRNA: 3'- gAAGGuuuugCGCUCCU--------------CCUACGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 142018 | 0.75 | 0.670448 |
Target: 5'- -cUCUAGGGCgGCGAGGAGcGccGCCGGc -3' miRNA: 3'- gaAGGUUUUG-CGCUCCUC-CuaCGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 33615 | 0.75 | 0.660101 |
Target: 5'- --aCCG--GCGCGGGGcGGGggGCCGGa -3' miRNA: 3'- gaaGGUuuUGCGCUCC-UCCuaCGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 66533 | 0.76 | 0.618567 |
Target: 5'- --gCCAGGccCGCGAGGGGGAaGUCGGg -3' miRNA: 3'- gaaGGUUUu-GCGCUCCUCCUaCGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 83802 | 0.77 | 0.536469 |
Target: 5'- -cUCCGGGG-GCGAGGAGGggGCgGGg -3' miRNA: 3'- gaAGGUUUUgCGCUCCUCCuaCGgCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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