miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5946 3' -52.5 NC_001806.1 + 53885 0.69 0.930363
Target:  5'- --gCC---GCGCGGGGAucaGGGUcGCCGGg -3'
miRNA:   3'- gaaGGuuuUGCGCUCCU---CCUA-CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 59166 0.7 0.907432
Target:  5'- -gUgCGGGACGCgGAGGGGGcguAUGCCGc -3'
miRNA:   3'- gaAgGUUUUGCG-CUCCUCC---UACGGCc -5'
5946 3' -52.5 NC_001806.1 + 62318 0.66 0.978649
Target:  5'- --gCCu-GGCGCgGAGGGGGuuUGUCGGu -3'
miRNA:   3'- gaaGGuuUUGCG-CUCCUCCu-ACGGCC- -5'
5946 3' -52.5 NC_001806.1 + 62461 0.66 0.984805
Target:  5'- --aCCAGAAgGCGgaccaGGGuGGAgGCUGGg -3'
miRNA:   3'- gaaGGUUUUgCGC-----UCCuCCUaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 64648 0.77 0.536469
Target:  5'- -cUCCGuGAgGCGAGGGGGGcUGCCGa -3'
miRNA:   3'- gaAGGUuUUgCGCUCCUCCU-ACGGCc -5'
5946 3' -52.5 NC_001806.1 + 66533 0.76 0.618567
Target:  5'- --gCCAGGccCGCGAGGGGGAaGUCGGg -3'
miRNA:   3'- gaaGGUUUu-GCGCUCCUCCUaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 66649 0.71 0.850203
Target:  5'- -cUCCAAcccGCGCG-GGGGGA-GCUGGc -3'
miRNA:   3'- gaAGGUUu--UGCGCuCCUCCUaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 66784 0.67 0.975472
Target:  5'- -gUCCAcGAACGCacaugccGGGAGGAUcacggccgagcgggGCCGGc -3'
miRNA:   3'- gaAGGU-UUUGCGc------UCCUCCUA--------------CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 67910 0.67 0.964563
Target:  5'- --cCUggGucCGCGAacGGGAUGCCGGg -3'
miRNA:   3'- gaaGGuuUu-GCGCUccUCCUACGGCC- -5'
5946 3' -52.5 NC_001806.1 + 71746 0.72 0.816521
Target:  5'- -cUCCAcgaugGAACGCGGGGGGGAUcGCg-- -3'
miRNA:   3'- gaAGGU-----UUUGCGCUCCUCCUA-CGgcc -5'
5946 3' -52.5 NC_001806.1 + 72633 0.66 0.982926
Target:  5'- -cUCCGAGACaucccGGGGGAcgGCCGGu -3'
miRNA:   3'- gaAGGUUUUGcgcu-CCUCCUa-CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 76055 0.72 0.816521
Target:  5'- gCUUCUGcgGCugGCGGGGGGGcUGCUGGa -3'
miRNA:   3'- -GAAGGUuuUG--CGCUCCUCCuACGGCC- -5'
5946 3' -52.5 NC_001806.1 + 83802 0.77 0.536469
Target:  5'- -cUCCGGGG-GCGAGGAGGggGCgGGg -3'
miRNA:   3'- gaAGGUUUUgCGCUCCUCCuaCGgCC- -5'
5946 3' -52.5 NC_001806.1 + 83982 0.7 0.880634
Target:  5'- --gCCGGGGacCGCGAgccGGAGGAgucGCCGGa -3'
miRNA:   3'- gaaGGUUUU--GCGCU---CCUCCUa--CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 84423 0.74 0.711423
Target:  5'- --cCCGAGACGCagcccGGGGAcGGggGCCGGu -3'
miRNA:   3'- gaaGGUUUUGCG-----CUCCU-CCuaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 85748 0.72 0.83374
Target:  5'- -gUCCGGAgccGCGCGGccacgucguccGGGGGGUGCCa- -3'
miRNA:   3'- gaAGGUUU---UGCGCU-----------CCUCCUACGGcc -5'
5946 3' -52.5 NC_001806.1 + 87010 0.71 0.873354
Target:  5'- gCUUUCGcAugGCGAgccagucccgcaGGAGGAUGCUGa -3'
miRNA:   3'- -GAAGGUuUugCGCU------------CCUCCUACGGCc -5'
5946 3' -52.5 NC_001806.1 + 89778 0.66 0.978649
Target:  5'- ---gCGGGGCGUG-GGAGGG-GCUGGg -3'
miRNA:   3'- gaagGUUUUGCGCuCCUCCUaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 91778 0.68 0.953111
Target:  5'- cCUUCUcggcccuGAAGCGCGcGGAcGGAUccgagaccGCCGGa -3'
miRNA:   3'- -GAAGG-------UUUUGCGCuCCU-CCUA--------CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 95250 0.69 0.935481
Target:  5'- --cCCGAAcaguGCGaCGAGGAGGcgcugcgucgcGUGCUGGc -3'
miRNA:   3'- gaaGGUUU----UGC-GCUCCUCC-----------UACGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.