miRNA display CGI


Results 61 - 80 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5946 3' -52.5 NC_001806.1 + 95451 0.67 0.976234
Target:  5'- --cCCGAGACGUG-GGGGGAcaucGCCa- -3'
miRNA:   3'- gaaGGUUUUGCGCuCCUCCUa---CGGcc -5'
5946 3' -52.5 NC_001806.1 + 95562 0.66 0.984805
Target:  5'- -gUCCGcgagcAGCGCGGGGAGcucgagaaGAUGCUGcGg -3'
miRNA:   3'- gaAGGUu----UUGCGCUCCUC--------CUACGGC-C- -5'
5946 3' -52.5 NC_001806.1 + 98843 0.68 0.953515
Target:  5'- -gUCCGggGAGgGCGAGGAGGgcGgCGa -3'
miRNA:   3'- gaAGGU--UUUgCGCUCCUCCuaCgGCc -5'
5946 3' -52.5 NC_001806.1 + 99572 0.66 0.982926
Target:  5'- -aUCCGGuGGCgGCGGGGGGGAacGCgGGc -3'
miRNA:   3'- gaAGGUU-UUG-CGCUCCUCCUa-CGgCC- -5'
5946 3' -52.5 NC_001806.1 + 100202 0.72 0.832896
Target:  5'- --cCCGGgauacugaugggcGACGUGGGGAGGGuaaUGCUGGg -3'
miRNA:   3'- gaaGGUU-------------UUGCGCUCCUCCU---ACGGCC- -5'
5946 3' -52.5 NC_001806.1 + 100388 0.7 0.907432
Target:  5'- --gCCGGgcGGCGCGGGGgccGGGGUGCCc- -3'
miRNA:   3'- gaaGGUU--UUGCGCUCC---UCCUACGGcc -5'
5946 3' -52.5 NC_001806.1 + 103576 0.66 0.986523
Target:  5'- -gUCUGAcGCGgGGGGAGGggGaaGGa -3'
miRNA:   3'- gaAGGUUuUGCgCUCCUCCuaCggCC- -5'
5946 3' -52.5 NC_001806.1 + 109471 0.67 0.964563
Target:  5'- --gUCAAGuggcugGCGUGGGGcgGGGAUGCCGu -3'
miRNA:   3'- gaaGGUUU------UGCGCUCC--UCCUACGGCc -5'
5946 3' -52.5 NC_001806.1 + 113390 0.71 0.873354
Target:  5'- gUUCCGGGACGCccGGGGccuGGA-GCUGGg -3'
miRNA:   3'- gAAGGUUUUGCG--CUCCu--CCUaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 128562 0.7 0.901088
Target:  5'- -gUCCAGGGCGCGgucguagcGGGAGGucacggcGCCGa -3'
miRNA:   3'- gaAGGUUUUGCGC--------UCCUCCua-----CGGCc -5'
5946 3' -52.5 NC_001806.1 + 130443 0.67 0.964563
Target:  5'- --cCCA--GCGCGAucuacgGGAGcugcGGUGCCGGg -3'
miRNA:   3'- gaaGGUuuUGCGCU------CCUC----CUACGGCC- -5'
5946 3' -52.5 NC_001806.1 + 133700 0.66 0.984805
Target:  5'- -gUCCcGGAgGCGGGGAGucgGUCGGc -3'
miRNA:   3'- gaAGGuUUUgCGCUCCUCcuaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 142018 0.75 0.670448
Target:  5'- -cUCUAGGGCgGCGAGGAGcGccGCCGGc -3'
miRNA:   3'- gaAGGUUUUG-CGCUCCUC-CuaCGGCC- -5'
5946 3' -52.5 NC_001806.1 + 143261 0.66 0.980877
Target:  5'- ----gGGGAUGUGGGcGGGGGUGCgCGGg -3'
miRNA:   3'- gaaggUUUUGCGCUC-CUCCUACG-GCC- -5'
5946 3' -52.5 NC_001806.1 + 145618 0.75 0.677672
Target:  5'- gUUCCuaaa-GCGAGGAuacggaggaguggcGGGUGCCGGg -3'
miRNA:   3'- gAAGGuuuugCGCUCCU--------------CCUACGGCC- -5'
5946 3' -52.5 NC_001806.1 + 145671 0.67 0.973626
Target:  5'- -cUCUGGcACGCGGGGguGGGAaggGUCGGg -3'
miRNA:   3'- gaAGGUUuUGCGCUCC--UCCUa--CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 147287 0.67 0.976234
Target:  5'- --gCCGAgGACGUcAGGGGGGUcCCGGg -3'
miRNA:   3'- gaaGGUU-UUGCGcUCCUCCUAcGGCC- -5'
5946 3' -52.5 NC_001806.1 + 147380 0.68 0.961109
Target:  5'- --gCCG--GCGCGAGGGGGGgacGCgUGGa -3'
miRNA:   3'- gaaGGUuuUGCGCUCCUCCUa--CG-GCC- -5'
5946 3' -52.5 NC_001806.1 + 147689 0.71 0.84207
Target:  5'- --gCCGGGGCGCGGGGGcGGGccCCGGa -3'
miRNA:   3'- gaaGGUUUUGCGCUCCU-CCUacGGCC- -5'
5946 3' -52.5 NC_001806.1 + 148083 0.67 0.973626
Target:  5'- --cCCGAugGGCGcCGAGGGGGgcGCUGu -3'
miRNA:   3'- gaaGGUU--UUGC-GCUCCUCCuaCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.