Results 21 - 40 of 81 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5946 | 3' | -52.5 | NC_001806.1 | + | 95451 | 0.67 | 0.976234 |
Target: 5'- --cCCGAGACGUG-GGGGGAcaucGCCa- -3' miRNA: 3'- gaaGGUUUUGCGCuCCUCCUa---CGGcc -5' |
|||||||
5946 | 3' | -52.5 | NC_001806.1 | + | 95250 | 0.69 | 0.935481 |
Target: 5'- --cCCGAAcaguGCGaCGAGGAGGcgcugcgucgcGUGCUGGc -3' miRNA: 3'- gaaGGUUU----UGC-GCUCCUCC-----------UACGGCC- -5' |
|||||||
5946 | 3' | -52.5 | NC_001806.1 | + | 91778 | 0.68 | 0.953111 |
Target: 5'- cCUUCUcggcccuGAAGCGCGcGGAcGGAUccgagaccGCCGGa -3' miRNA: 3'- -GAAGG-------UUUUGCGCuCCU-CCUA--------CGGCC- -5' |
|||||||
5946 | 3' | -52.5 | NC_001806.1 | + | 89778 | 0.66 | 0.978649 |
Target: 5'- ---gCGGGGCGUG-GGAGGG-GCUGGg -3' miRNA: 3'- gaagGUUUUGCGCuCCUCCUaCGGCC- -5' |
|||||||
5946 | 3' | -52.5 | NC_001806.1 | + | 87010 | 0.71 | 0.873354 |
Target: 5'- gCUUUCGcAugGCGAgccagucccgcaGGAGGAUGCUGa -3' miRNA: 3'- -GAAGGUuUugCGCU------------CCUCCUACGGCc -5' |
|||||||
5946 | 3' | -52.5 | NC_001806.1 | + | 85748 | 0.72 | 0.83374 |
Target: 5'- -gUCCGGAgccGCGCGGccacgucguccGGGGGGUGCCa- -3' miRNA: 3'- gaAGGUUU---UGCGCU-----------CCUCCUACGGcc -5' |
|||||||
5946 | 3' | -52.5 | NC_001806.1 | + | 84423 | 0.74 | 0.711423 |
Target: 5'- --cCCGAGACGCagcccGGGGAcGGggGCCGGu -3' miRNA: 3'- gaaGGUUUUGCG-----CUCCU-CCuaCGGCC- -5' |
|||||||
5946 | 3' | -52.5 | NC_001806.1 | + | 83982 | 0.7 | 0.880634 |
Target: 5'- --gCCGGGGacCGCGAgccGGAGGAgucGCCGGa -3' miRNA: 3'- gaaGGUUUU--GCGCU---CCUCCUa--CGGCC- -5' |
|||||||
5946 | 3' | -52.5 | NC_001806.1 | + | 83802 | 0.77 | 0.536469 |
Target: 5'- -cUCCGGGG-GCGAGGAGGggGCgGGg -3' miRNA: 3'- gaAGGUUUUgCGCUCCUCCuaCGgCC- -5' |
|||||||
5946 | 3' | -52.5 | NC_001806.1 | + | 76055 | 0.72 | 0.816521 |
Target: 5'- gCUUCUGcgGCugGCGGGGGGGcUGCUGGa -3' miRNA: 3'- -GAAGGUuuUG--CGCUCCUCCuACGGCC- -5' |
|||||||
5946 | 3' | -52.5 | NC_001806.1 | + | 72633 | 0.66 | 0.982926 |
Target: 5'- -cUCCGAGACaucccGGGGGAcgGCCGGu -3' miRNA: 3'- gaAGGUUUUGcgcu-CCUCCUa-CGGCC- -5' |
|||||||
5946 | 3' | -52.5 | NC_001806.1 | + | 71746 | 0.72 | 0.816521 |
Target: 5'- -cUCCAcgaugGAACGCGGGGGGGAUcGCg-- -3' miRNA: 3'- gaAGGU-----UUUGCGCUCCUCCUA-CGgcc -5' |
|||||||
5946 | 3' | -52.5 | NC_001806.1 | + | 67910 | 0.67 | 0.964563 |
Target: 5'- --cCUggGucCGCGAacGGGAUGCCGGg -3' miRNA: 3'- gaaGGuuUu-GCGCUccUCCUACGGCC- -5' |
|||||||
5946 | 3' | -52.5 | NC_001806.1 | + | 66784 | 0.67 | 0.975472 |
Target: 5'- -gUCCAcGAACGCacaugccGGGAGGAUcacggccgagcgggGCCGGc -3' miRNA: 3'- gaAGGU-UUUGCGc------UCCUCCUA--------------CGGCC- -5' |
|||||||
5946 | 3' | -52.5 | NC_001806.1 | + | 66649 | 0.71 | 0.850203 |
Target: 5'- -cUCCAAcccGCGCG-GGGGGA-GCUGGc -3' miRNA: 3'- gaAGGUUu--UGCGCuCCUCCUaCGGCC- -5' |
|||||||
5946 | 3' | -52.5 | NC_001806.1 | + | 66533 | 0.76 | 0.618567 |
Target: 5'- --gCCAGGccCGCGAGGGGGAaGUCGGg -3' miRNA: 3'- gaaGGUUUu-GCGCUCCUCCUaCGGCC- -5' |
|||||||
5946 | 3' | -52.5 | NC_001806.1 | + | 64648 | 0.77 | 0.536469 |
Target: 5'- -cUCCGuGAgGCGAGGGGGGcUGCCGa -3' miRNA: 3'- gaAGGUuUUgCGCUCCUCCU-ACGGCc -5' |
|||||||
5946 | 3' | -52.5 | NC_001806.1 | + | 62461 | 0.66 | 0.984805 |
Target: 5'- --aCCAGAAgGCGgaccaGGGuGGAgGCUGGg -3' miRNA: 3'- gaaGGUUUUgCGC-----UCCuCCUaCGGCC- -5' |
|||||||
5946 | 3' | -52.5 | NC_001806.1 | + | 62318 | 0.66 | 0.978649 |
Target: 5'- --gCCu-GGCGCgGAGGGGGuuUGUCGGu -3' miRNA: 3'- gaaGGuuUUGCG-CUCCUCCu-ACGGCC- -5' |
|||||||
5946 | 3' | -52.5 | NC_001806.1 | + | 59166 | 0.7 | 0.907432 |
Target: 5'- -gUgCGGGACGCgGAGGGGGcguAUGCCGc -3' miRNA: 3'- gaAgGUUUUGCG-CUCCUCC---UACGGCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home