Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5946 | 3' | -52.5 | NC_001806.1 | + | 62461 | 0.66 | 0.984805 |
Target: 5'- --aCCAGAAgGCGgaccaGGGuGGAgGCUGGg -3' miRNA: 3'- gaaGGUUUUgCGC-----UCCuCCUaCGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 6655 | 0.66 | 0.984805 |
Target: 5'- gCUUCCugcuCGuCGGGGGGGAgcaUGUCGu -3' miRNA: 3'- -GAAGGuuuuGC-GCUCCUCCU---ACGGCc -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 21317 | 0.66 | 0.984805 |
Target: 5'- --aCCG--ACGCcGGcGAGGAcGCCGGg -3' miRNA: 3'- gaaGGUuuUGCGcUC-CUCCUaCGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 95562 | 0.66 | 0.984805 |
Target: 5'- -gUCCGcgagcAGCGCGGGGAGcucgagaaGAUGCUGcGg -3' miRNA: 3'- gaAGGUu----UUGCGCUCCUC--------CUACGGC-C- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 133700 | 0.66 | 0.984805 |
Target: 5'- -gUCCcGGAgGCGGGGAGucgGUCGGc -3' miRNA: 3'- gaAGGuUUUgCGCUCCUCcuaCGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 89778 | 0.66 | 0.978649 |
Target: 5'- ---gCGGGGCGUG-GGAGGG-GCUGGg -3' miRNA: 3'- gaagGUUUUGCGCuCCUCCUaCGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 34783 | 0.66 | 0.978649 |
Target: 5'- gUUCgGGGGgGgGGGGGGGggGCgGGa -3' miRNA: 3'- gAAGgUUUUgCgCUCCUCCuaCGgCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 26034 | 0.67 | 0.967797 |
Target: 5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3' miRNA: 3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 26058 | 0.67 | 0.967797 |
Target: 5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3' miRNA: 3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 26082 | 0.67 | 0.967797 |
Target: 5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3' miRNA: 3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 26106 | 0.67 | 0.967797 |
Target: 5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3' miRNA: 3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 26130 | 0.67 | 0.967797 |
Target: 5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3' miRNA: 3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 26154 | 0.67 | 0.967797 |
Target: 5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3' miRNA: 3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 30856 | 0.67 | 0.973626 |
Target: 5'- gCUUCUggGcCGCGGGGgccgAGGAagugUGcCCGGa -3' miRNA: 3'- -GAAGGuuUuGCGCUCC----UCCU----AC-GGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 3340 | 0.67 | 0.973626 |
Target: 5'- -cUCCGGc-CGCGGGGGGcuggcggGCCGGg -3' miRNA: 3'- gaAGGUUuuGCGCUCCUCcua----CGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 145671 | 0.67 | 0.973626 |
Target: 5'- -cUCUGGcACGCGGGGguGGGAaggGUCGGg -3' miRNA: 3'- gaAGGUUuUGCGCUCC--UCCUa--CGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 148083 | 0.67 | 0.973626 |
Target: 5'- --cCCGAugGGCGcCGAGGGGGgcGCUGu -3' miRNA: 3'- gaaGGUU--UUGC-GCUCCUCCuaCGGCc -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 66784 | 0.67 | 0.975472 |
Target: 5'- -gUCCAcGAACGCacaugccGGGAGGAUcacggccgagcgggGCCGGc -3' miRNA: 3'- gaAGGU-UUUGCGc------UCCUCCUA--------------CGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 147287 | 0.67 | 0.976234 |
Target: 5'- --gCCGAgGACGUcAGGGGGGUcCCGGg -3' miRNA: 3'- gaaGGUU-UUGCGcUCCUCCUAcGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 95451 | 0.67 | 0.976234 |
Target: 5'- --cCCGAGACGUG-GGGGGAcaucGCCa- -3' miRNA: 3'- gaaGGUUUUGCGCuCCUCCUa---CGGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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