Results 61 - 80 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5946 | 3' | -52.5 | NC_001806.1 | + | 148083 | 0.67 | 0.973626 |
Target: 5'- --cCCGAugGGCGcCGAGGGGGgcGCUGu -3' miRNA: 3'- gaaGGUU--UUGC-GCUCCUCCuaCGGCc -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 145671 | 0.67 | 0.973626 |
Target: 5'- -cUCUGGcACGCGGGGguGGGAaggGUCGGg -3' miRNA: 3'- gaAGGUUuUGCGCUCC--UCCUa--CGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 151223 | 0.67 | 0.964563 |
Target: 5'- ----aGGGGCGCGAGGGGGG-GUgGGa -3' miRNA: 3'- gaaggUUUUGCGCUCCUCCUaCGgCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 130443 | 0.67 | 0.964563 |
Target: 5'- --cCCA--GCGCGAucuacgGGAGcugcGGUGCCGGg -3' miRNA: 3'- gaaGGUuuUGCGCU------CCUC----CUACGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 109471 | 0.67 | 0.964563 |
Target: 5'- --gUCAAGuggcugGCGUGGGGcgGGGAUGCCGu -3' miRNA: 3'- gaaGGUUU------UGCGCUCC--UCCUACGGCc -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 67910 | 0.67 | 0.964563 |
Target: 5'- --cCUggGucCGCGAacGGGAUGCCGGg -3' miRNA: 3'- gaaGGuuUu-GCGCUccUCCUACGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 24583 | 0.67 | 0.964563 |
Target: 5'- --gCCGGAcuucUGCGAGGAGGAgGCCc- -3' miRNA: 3'- gaaGGUUUu---GCGCUCCUCCUaCGGcc -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 47602 | 0.67 | 0.96355 |
Target: 5'- uCUUCCAcgccgagcuacGGGCGCG-GGAGGAgagcuaucgaaccgUGuuGGc -3' miRNA: 3'- -GAAGGU-----------UUUGCGCuCCUCCU--------------ACggCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 147380 | 0.68 | 0.961109 |
Target: 5'- --gCCG--GCGCGAGGGGGGgacGCgUGGa -3' miRNA: 3'- gaaGGUuuUGCGCUCCUCCUa--CG-GCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 10374 | 0.68 | 0.961109 |
Target: 5'- gCUgggCCAAGaccucggggggGCGgGGGGAGGcgggaGCCGGg -3' miRNA: 3'- -GAa--GGUUU-----------UGCgCUCCUCCua---CGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 25986 | 0.67 | 0.967797 |
Target: 5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3' miRNA: 3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 26010 | 0.67 | 0.967797 |
Target: 5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3' miRNA: 3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 3340 | 0.67 | 0.973626 |
Target: 5'- -cUCCGGc-CGCGGGGGGcuggcggGCCGGg -3' miRNA: 3'- gaAGGUUuuGCGCUCCUCcua----CGGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 30856 | 0.67 | 0.973626 |
Target: 5'- gCUUCUggGcCGCGGGGgccgAGGAagugUGcCCGGa -3' miRNA: 3'- -GAAGGuuUuGCGCUCC----UCCU----AC-GGCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 26154 | 0.67 | 0.967797 |
Target: 5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3' miRNA: 3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 26130 | 0.67 | 0.967797 |
Target: 5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3' miRNA: 3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 26106 | 0.67 | 0.967797 |
Target: 5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3' miRNA: 3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 26082 | 0.67 | 0.967797 |
Target: 5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3' miRNA: 3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 26058 | 0.67 | 0.967797 |
Target: 5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3' miRNA: 3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5' |
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5946 | 3' | -52.5 | NC_001806.1 | + | 26034 | 0.67 | 0.967797 |
Target: 5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3' miRNA: 3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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