miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5946 3' -52.5 NC_001806.1 + 3340 0.67 0.973626
Target:  5'- -cUCCGGc-CGCGGGGGGcuggcggGCCGGg -3'
miRNA:   3'- gaAGGUUuuGCGCUCCUCcua----CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 145671 0.67 0.973626
Target:  5'- -cUCUGGcACGCGGGGguGGGAaggGUCGGg -3'
miRNA:   3'- gaAGGUUuUGCGCUCC--UCCUa--CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 148083 0.67 0.973626
Target:  5'- --cCCGAugGGCGcCGAGGGGGgcGCUGu -3'
miRNA:   3'- gaaGGUU--UUGC-GCUCCUCCuaCGGCc -5'
5946 3' -52.5 NC_001806.1 + 25986 0.67 0.967797
Target:  5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3'
miRNA:   3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5'
5946 3' -52.5 NC_001806.1 + 26010 0.67 0.967797
Target:  5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3'
miRNA:   3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5'
5946 3' -52.5 NC_001806.1 + 26034 0.67 0.967797
Target:  5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3'
miRNA:   3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5'
5946 3' -52.5 NC_001806.1 + 26058 0.67 0.967797
Target:  5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3'
miRNA:   3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5'
5946 3' -52.5 NC_001806.1 + 26082 0.67 0.967797
Target:  5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3'
miRNA:   3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5'
5946 3' -52.5 NC_001806.1 + 26106 0.67 0.967797
Target:  5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3'
miRNA:   3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5'
5946 3' -52.5 NC_001806.1 + 26130 0.67 0.967797
Target:  5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3'
miRNA:   3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5'
5946 3' -52.5 NC_001806.1 + 26154 0.67 0.967797
Target:  5'- ----aGGAGCGgGGGGAGGA-GCgGGg -3'
miRNA:   3'- gaaggUUUUGCgCUCCUCCUaCGgCC- -5'
5946 3' -52.5 NC_001806.1 + 24583 0.67 0.964563
Target:  5'- --gCCGGAcuucUGCGAGGAGGAgGCCc- -3'
miRNA:   3'- gaaGGUUUu---GCGCUCCUCCUaCGGcc -5'
5946 3' -52.5 NC_001806.1 + 67910 0.67 0.964563
Target:  5'- --cCUggGucCGCGAacGGGAUGCCGGg -3'
miRNA:   3'- gaaGGuuUu-GCGCUccUCCUACGGCC- -5'
5946 3' -52.5 NC_001806.1 + 109471 0.67 0.964563
Target:  5'- --gUCAAGuggcugGCGUGGGGcgGGGAUGCCGu -3'
miRNA:   3'- gaaGGUUU------UGCGCUCC--UCCUACGGCc -5'
5946 3' -52.5 NC_001806.1 + 130443 0.67 0.964563
Target:  5'- --cCCA--GCGCGAucuacgGGAGcugcGGUGCCGGg -3'
miRNA:   3'- gaaGGUuuUGCGCU------CCUC----CUACGGCC- -5'
5946 3' -52.5 NC_001806.1 + 151223 0.67 0.964563
Target:  5'- ----aGGGGCGCGAGGGGGG-GUgGGa -3'
miRNA:   3'- gaaggUUUUGCGCUCCUCCUaCGgCC- -5'
5946 3' -52.5 NC_001806.1 + 47602 0.67 0.96355
Target:  5'- uCUUCCAcgccgagcuacGGGCGCG-GGAGGAgagcuaucgaaccgUGuuGGc -3'
miRNA:   3'- -GAAGGU-----------UUUGCGCuCCUCCU--------------ACggCC- -5'
5946 3' -52.5 NC_001806.1 + 147380 0.68 0.961109
Target:  5'- --gCCG--GCGCGAGGGGGGgacGCgUGGa -3'
miRNA:   3'- gaaGGUuuUGCGCUCCUCCUa--CG-GCC- -5'
5946 3' -52.5 NC_001806.1 + 10374 0.68 0.961109
Target:  5'- gCUgggCCAAGaccucggggggGCGgGGGGAGGcgggaGCCGGg -3'
miRNA:   3'- -GAa--GGUUU-----------UGCgCUCCUCCua---CGGCC- -5'
5946 3' -52.5 NC_001806.1 + 98843 0.68 0.953515
Target:  5'- -gUCCGggGAGgGCGAGGAGGgcGgCGa -3'
miRNA:   3'- gaAGGU--UUUgCGCUCCUCCuaCgGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.