miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5946 5' -62.7 NC_001806.1 + 134830 0.68 0.536631
Target:  5'- -aCCG-CgGCUggCGGUCGCCGaCCUGGCg -3'
miRNA:   3'- caGGCaG-CGG--GCCAGUGGCaGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 68312 0.68 0.546
Target:  5'- uUCUGUUGUCgggaaCGGcCAUCGcCCCGGCa -3'
miRNA:   3'- cAGGCAGCGG-----GCCaGUGGCaGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 148363 0.68 0.555421
Target:  5'- -aCCGUCGUCCaGGUCGucgucauccUCGUCCgUGGUg -3'
miRNA:   3'- caGGCAGCGGG-CCAGU---------GGCAGG-GCCG- -5'
5946 5' -62.7 NC_001806.1 + 83219 0.68 0.554476
Target:  5'- --aCGUCGCCgccgacgUGGUCACCGcCCCcucaagGGCc -3'
miRNA:   3'- cagGCAGCGG-------GCCAGUGGCaGGG------CCG- -5'
5946 5' -62.7 NC_001806.1 + 23267 0.68 0.553533
Target:  5'- cUCCGccgCGCCgCGGgaggggcgcaagCGCaagaGUCCCGGCc -3'
miRNA:   3'- cAGGCa--GCGG-GCCa-----------GUGg---CAGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 150939 0.68 0.546
Target:  5'- cUCCGcCaCCCGG-CGCCGgaaccgagCCCGGUc -3'
miRNA:   3'- cAGGCaGcGGGCCaGUGGCa-------GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 26679 0.68 0.546
Target:  5'- -cCCGgC-CCCGGccccCACCG-CCCGGCg -3'
miRNA:   3'- caGGCaGcGGGCCa---GUGGCaGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 144840 0.68 0.546
Target:  5'- gGUCCGggcccCGUCCGGaC-CCGcUCgCCGGCa -3'
miRNA:   3'- -CAGGCa----GCGGGCCaGuGGC-AG-GGCCG- -5'
5946 5' -62.7 NC_001806.1 + 33128 0.69 0.455344
Target:  5'- -cCCGgacCGCCgCGGUCGggggccccUCGUCCCGGg -3'
miRNA:   3'- caGGCa--GCGG-GCCAGU--------GGCAGGGCCg -5'
5946 5' -62.7 NC_001806.1 + 125854 0.69 0.464061
Target:  5'- -cCCGgcCGCCgCGGaCGCCGUggcgcCCCGGCc -3'
miRNA:   3'- caGGCa-GCGG-GCCaGUGGCA-----GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 61596 0.69 0.481752
Target:  5'- -gCCGUCGUgugcaCGGcC-UCGUCCCGGCu -3'
miRNA:   3'- caGGCAGCGg----GCCaGuGGCAGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 73338 0.69 0.481752
Target:  5'- aUCag-CGCCuuaCGGUCGCCGUaUCCGGCc -3'
miRNA:   3'- cAGgcaGCGG---GCCAGUGGCA-GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 120688 0.69 0.481752
Target:  5'- -cCCGUCGCgCGGgcCGCUGUCCUuaGGUu -3'
miRNA:   3'- caGGCAGCGgGCCa-GUGGCAGGG--CCG- -5'
5946 5' -62.7 NC_001806.1 + 57039 0.69 0.499763
Target:  5'- -gCCGg-GCCCGGg-GCCGgggccCCCGGCu -3'
miRNA:   3'- caGGCagCGGGCCagUGGCa----GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 78930 0.69 0.499763
Target:  5'- -cCCcUCGCCCGGggccCGCCGUgUCUGGUg -3'
miRNA:   3'- caGGcAGCGGGCCa---GUGGCA-GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 98014 0.7 0.446716
Target:  5'- -gCCaUCGCCuCGGcCACCGUgggCCGGCg -3'
miRNA:   3'- caGGcAGCGG-GCCaGUGGCAg--GGCCG- -5'
5946 5' -62.7 NC_001806.1 + 27074 0.7 0.444145
Target:  5'- -cCCGU-GCCCGGgcccuggcccgcggaGCCGgCCCGGCg -3'
miRNA:   3'- caGGCAgCGGGCCag-------------UGGCaGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 67195 0.7 0.43818
Target:  5'- -cCCaGcCGCUCGGUCuGCCGgCCUGGCg -3'
miRNA:   3'- caGG-CaGCGGGCCAG-UGGCaGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 26415 0.7 0.429737
Target:  5'- -cCCGgcCGCCCGGgcccacgggCGCCGUCCCaaccGCa -3'
miRNA:   3'- caGGCa-GCGGGCCa--------GUGGCAGGGc---CG- -5'
5946 5' -62.7 NC_001806.1 + 73292 0.7 0.421392
Target:  5'- cUCCGcCGCCCuggcccgcgaGGUCGCCGcguguUCgCGGCu -3'
miRNA:   3'- cAGGCaGCGGG----------CCAGUGGC-----AGgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.