Results 61 - 80 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5946 | 5' | -62.7 | NC_001806.1 | + | 73292 | 0.7 | 0.421392 |
Target: 5'- cUCCGcCGCCCuggcccgcgaGGUCGCCGcguguUCgCGGCu -3' miRNA: 3'- cAGGCaGCGGG----------CCAGUGGC-----AGgGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 26415 | 0.7 | 0.429737 |
Target: 5'- -cCCGgcCGCCCGGgcccacgggCGCCGUCCCaaccGCa -3' miRNA: 3'- caGGCa-GCGGGCCa--------GUGGCAGGGc---CG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 67195 | 0.7 | 0.43818 |
Target: 5'- -cCCaGcCGCUCGGUCuGCCGgCCUGGCg -3' miRNA: 3'- caGG-CaGCGGGCCAG-UGGCaGGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 27074 | 0.7 | 0.444145 |
Target: 5'- -cCCGU-GCCCGGgcccuggcccgcggaGCCGgCCCGGCg -3' miRNA: 3'- caGGCAgCGGGCCag-------------UGGCaGGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 98014 | 0.7 | 0.446716 |
Target: 5'- -gCCaUCGCCuCGGcCACCGUgggCCGGCg -3' miRNA: 3'- caGGcAGCGG-GCCaGUGGCAg--GGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 5343 | 0.7 | 0.446716 |
Target: 5'- -cCCGcgcuUCGUCCGcGuaUCGgCGUCCCGGCg -3' miRNA: 3'- caGGC----AGCGGGC-C--AGUgGCAGGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 16711 | 0.71 | 0.361299 |
Target: 5'- --aCGUCGUCCGGggcguccucgucgaCAUCGUCCgCGGCa -3' miRNA: 3'- cagGCAGCGGGCCa-------------GUGGCAGG-GCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 22053 | 0.71 | 0.373444 |
Target: 5'- -gCCGUgGCCCGG-CGCCGggCCCccgcccccggGGCg -3' miRNA: 3'- caGGCAgCGGGCCaGUGGCa-GGG----------CCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 4149 | 0.71 | 0.381175 |
Target: 5'- -gCUGUCGCCCaGGcCGCCGUacagcacccgcCCCGGg -3' miRNA: 3'- caGGCAGCGGG-CCaGUGGCA-----------GGGCCg -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 150118 | 0.71 | 0.381175 |
Target: 5'- -cCCGUC-CCCGGggACCaaCCCGGCg -3' miRNA: 3'- caGGCAGcGGGCCagUGGcaGGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 5825 | 0.71 | 0.381175 |
Target: 5'- -cCCGcgCGCCCGuUgGCCGUCCCcgGGCc -3' miRNA: 3'- caGGCa-GCGGGCcAgUGGCAGGG--CCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 107608 | 0.71 | 0.381175 |
Target: 5'- aUCCGagacCCCGGUCGaaGUCCUGGCc -3' miRNA: 3'- cAGGCagc-GGGCCAGUggCAGGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 81885 | 0.71 | 0.388223 |
Target: 5'- -aCCGUCcccccugGCCCGGaaAcCCGUUCCGGCc -3' miRNA: 3'- caGGCAG-------CGGGCCagU-GGCAGGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 76218 | 0.71 | 0.389011 |
Target: 5'- aUCCGcgaUCGCCUGGaCGCCcUCCgGGCc -3' miRNA: 3'- cAGGC---AGCGGGCCaGUGGcAGGgCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 58047 | 0.71 | 0.392176 |
Target: 5'- uGUCUGUUggcucgcucccagagGCCCGGgagGCCGagcUCCCGGCu -3' miRNA: 3'- -CAGGCAG---------------CGGGCCag-UGGC---AGGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 79773 | 0.72 | 0.340714 |
Target: 5'- -aCgGUCGcCCCGGUUACCGauuucgcgcgcccCCCGGCc -3' miRNA: 3'- caGgCAGC-GGGCCAGUGGCa------------GGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 100012 | 0.73 | 0.282893 |
Target: 5'- aGUCCG-CGUCCGGU--UCGUCCUGGUc -3' miRNA: 3'- -CAGGCaGCGGGCCAguGGCAGGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 121919 | 0.74 | 0.258764 |
Target: 5'- -aCCGUUGCCCGG--GCCGUugCCCGGg -3' miRNA: 3'- caGGCAGCGGGCCagUGGCA--GGGCCg -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 23091 | 0.74 | 0.258764 |
Target: 5'- -gCCGUgaGCCUGGUCGCCGgggCCCugGGCc -3' miRNA: 3'- caGGCAg-CGGGCCAGUGGCa--GGG--CCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 4747 | 0.74 | 0.247343 |
Target: 5'- -gCCGggGCCCGGUCGCCGgcggCgUCGGCu -3' miRNA: 3'- caGGCagCGGGCCAGUGGCa---G-GGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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