Results 81 - 83 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5946 | 5' | -62.7 | NC_001806.1 | + | 1717 | 0.74 | 0.264634 |
Target: 5'- -gCCGcCGCCCGGccguccagCGCCGgcagcacggCCCGGCg -3' miRNA: 3'- caGGCaGCGGGCCa-------GUGGCa--------GGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 76621 | 0.75 | 0.210629 |
Target: 5'- aUCUGaaGaCCCugcugaagguGGUCGCCGUCCCGGCg -3' miRNA: 3'- cAGGCagC-GGG----------CCAGUGGCAGGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 43090 | 0.76 | 0.191827 |
Target: 5'- cGUCgGUCGCauaaagcgCGGUCACCuccacgggaGUCCCGGCc -3' miRNA: 3'- -CAGgCAGCGg-------GCCAGUGG---------CAGGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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