miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5946 5' -62.7 NC_001806.1 + 73292 0.7 0.421392
Target:  5'- cUCCGcCGCCCuggcccgcgaGGUCGCCGcguguUCgCGGCu -3'
miRNA:   3'- cAGGCaGCGGG----------CCAGUGGC-----AGgGCCG- -5'
5946 5' -62.7 NC_001806.1 + 73338 0.69 0.481752
Target:  5'- aUCag-CGCCuuaCGGUCGCCGUaUCCGGCc -3'
miRNA:   3'- cAGgcaGCGG---GCCAGUGGCA-GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 76218 0.71 0.389011
Target:  5'- aUCCGcgaUCGCCUGGaCGCCcUCCgGGCc -3'
miRNA:   3'- cAGGC---AGCGGGCCaGUGGcAGGgCCG- -5'
5946 5' -62.7 NC_001806.1 + 76621 0.75 0.210629
Target:  5'- aUCUGaaGaCCCugcugaagguGGUCGCCGUCCCGGCg -3'
miRNA:   3'- cAGGCagC-GGG----------CCAGUGGCAGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 77445 0.7 0.413145
Target:  5'- -cCCG-CGCCCGGgcgucCGCCccaCCCGGCc -3'
miRNA:   3'- caGGCaGCGGGCCa----GUGGca-GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 78930 0.69 0.499763
Target:  5'- -cCCcUCGCCCGGggccCGCCGUgUCUGGUg -3'
miRNA:   3'- caGGcAGCGGGCCa---GUGGCA-GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 79773 0.72 0.340714
Target:  5'- -aCgGUCGcCCCGGUUACCGauuucgcgcgcccCCCGGCc -3'
miRNA:   3'- caGgCAGC-GGGCCAGUGGCa------------GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 79920 0.68 0.50888
Target:  5'- uUCCGcC-CCCGGUCGCaa--CCGGCa -3'
miRNA:   3'- cAGGCaGcGGGCCAGUGgcagGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 81885 0.71 0.388223
Target:  5'- -aCCGUCcccccugGCCCGGaaAcCCGUUCCGGCc -3'
miRNA:   3'- caGGCAG-------CGGGCCagU-GGCAGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 83219 0.68 0.554476
Target:  5'- --aCGUCGCCgccgacgUGGUCACCGcCCCcucaagGGCc -3'
miRNA:   3'- cagGCAGCGG-------GCCAGUGGCaGGG------CCG- -5'
5946 5' -62.7 NC_001806.1 + 84106 0.7 0.404998
Target:  5'- -cCCGUCGCgccaCGGUcCGCCaGUCCUGGg -3'
miRNA:   3'- caGGCAGCGg---GCCA-GUGG-CAGGGCCg -5'
5946 5' -62.7 NC_001806.1 + 86659 0.7 0.413145
Target:  5'- -gCCGUCaGCCCGGcgGCCGUgaggCCgCGGCa -3'
miRNA:   3'- caGGCAG-CGGGCCagUGGCA----GG-GCCG- -5'
5946 5' -62.7 NC_001806.1 + 86838 0.66 0.67051
Target:  5'- aUCuCG-CGgCCGauggucGUCACCGUCgCGGCa -3'
miRNA:   3'- cAG-GCaGCgGGC------CAGUGGCAGgGCCG- -5'
5946 5' -62.7 NC_001806.1 + 88204 0.67 0.583943
Target:  5'- cUCCGggUGCCCGGcCACCGgaaaGGCc -3'
miRNA:   3'- cAGGCa-GCGGGCCaGUGGCagggCCG- -5'
5946 5' -62.7 NC_001806.1 + 90892 0.66 0.660911
Target:  5'- -gCCGUgGCCCgcgcGGcCGCCcaCCUGGCg -3'
miRNA:   3'- caGGCAgCGGG----CCaGUGGcaGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 91062 0.68 0.50888
Target:  5'- cUCCGUCauGgCCGGagaCGCCGcCCUGGCc -3'
miRNA:   3'- cAGGCAG--CgGGCCa--GUGGCaGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 93582 0.66 0.641657
Target:  5'- cGUUCGgcgGCCCGGgggCcCCGggaCCGGCa -3'
miRNA:   3'- -CAGGCag-CGGGCCa--GuGGCag-GGCCG- -5'
5946 5' -62.7 NC_001806.1 + 96636 0.66 0.680082
Target:  5'- -aCCGUCGCCgCGGgccaCGCCa-CCCuGCg -3'
miRNA:   3'- caGGCAGCGG-GCCa---GUGGcaGGGcCG- -5'
5946 5' -62.7 NC_001806.1 + 98014 0.7 0.446716
Target:  5'- -gCCaUCGCCuCGGcCACCGUgggCCGGCg -3'
miRNA:   3'- caGGcAGCGG-GCCaGUGGCAg--GGCCG- -5'
5946 5' -62.7 NC_001806.1 + 100012 0.73 0.282893
Target:  5'- aGUCCG-CGUCCGGU--UCGUCCUGGUc -3'
miRNA:   3'- -CAGGCaGCGGGCCAguGGCAGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.