Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5946 | 5' | -62.7 | NC_001806.1 | + | 100651 | 0.66 | 0.680082 |
Target: 5'- -gCCGcCGCUCGGcCACCaggcuccagcgGUCCCGcaGCa -3' miRNA: 3'- caGGCaGCGGGCCaGUGG-----------CAGGGC--CG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 125717 | 0.66 | 0.680082 |
Target: 5'- cGUCCG-CGCCCcucuGGcCAUCGgUCCCcucuGGCc -3' miRNA: 3'- -CAGGCaGCGGG----CCaGUGGC-AGGG----CCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 96636 | 0.66 | 0.680082 |
Target: 5'- -aCCGUCGCCgCGGgccaCGCCa-CCCuGCg -3' miRNA: 3'- caGGCAGCGG-GCCa---GUGGcaGGGcCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 102972 | 0.66 | 0.680082 |
Target: 5'- -cCCGUCGCCCccaccCGCCGgcucaucCCCGcGCg -3' miRNA: 3'- caGGCAGCGGGcca--GUGGCa------GGGC-CG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 120731 | 0.66 | 0.680082 |
Target: 5'- cGUCCGggaaCGgCCGGUCucgcuagcggcGCCuuccCCCGGCc -3' miRNA: 3'- -CAGGCa---GCgGGCCAG-----------UGGca--GGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 3380 | 0.66 | 0.650327 |
Target: 5'- -cCCGggacggcCGCCaGGUCGCCGUCgaagcccUCGGCc -3' miRNA: 3'- caGGCa------GCGGgCCAGUGGCAG-------GGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 57339 | 0.66 | 0.641657 |
Target: 5'- cGUCCGUCGUcgaCCcGUCccugGCCGUCCuccggggacaCGGCc -3' miRNA: 3'- -CAGGCAGCG---GGcCAG----UGGCAGG----------GCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 20090 | 0.67 | 0.574398 |
Target: 5'- -cCCGUCGUucguggCCGG-CGCCGUCUgcgGGCg -3' miRNA: 3'- caGGCAGCG------GGCCaGUGGCAGGg--CCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 24814 | 0.67 | 0.583943 |
Target: 5'- -gCCGgcgcCGCCCGGgauUCGCUGggcCUCGGCc -3' miRNA: 3'- caGGCa---GCGGGCC---AGUGGCa--GGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 88204 | 0.67 | 0.583943 |
Target: 5'- cUCCGggUGCCCGGcCACCGgaaaGGCc -3' miRNA: 3'- cAGGCa-GCGGGCCaGUGGCagggCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 64958 | 0.67 | 0.59352 |
Target: 5'- cGUCgG-CGCCCGG--GCCGggggUCCCGGg -3' miRNA: 3'- -CAGgCaGCGGGCCagUGGC----AGGGCCg -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 132597 | 0.67 | 0.59352 |
Target: 5'- uUCCGgguugGCCCacguUCACCGUgCCGGCc -3' miRNA: 3'- cAGGCag---CGGGcc--AGUGGCAgGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 1227 | 0.67 | 0.603122 |
Target: 5'- gGUCUcacaagCGCCCcGcC-CCGUCCCGGCc -3' miRNA: 3'- -CAGGca----GCGGGcCaGuGGCAGGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 144963 | 0.67 | 0.603122 |
Target: 5'- -cCCGUggcgGCCCGG-C-CCGgggcCCCGGCg -3' miRNA: 3'- caGGCAg---CGGGCCaGuGGCa---GGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 2318 | 0.67 | 0.603122 |
Target: 5'- -cCCGcCGCCggccaGGUCcUCG-CCCGGCa -3' miRNA: 3'- caGGCaGCGGg----CCAGuGGCaGGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 52750 | 0.67 | 0.612742 |
Target: 5'- uUCCGgaugcgaaCGaCCCGGUCGCCGagCCCcccgcugcGGCc -3' miRNA: 3'- cAGGCa-------GC-GGGCCAGUGGCa-GGG--------CCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 70731 | 0.67 | 0.612742 |
Target: 5'- uGUCCGUCGUguCCGGcauUCACg--CCCGGg -3' miRNA: 3'- -CAGGCAGCG--GGCC---AGUGgcaGGGCCg -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 104920 | 0.66 | 0.622376 |
Target: 5'- cGUUCGUgGCCCucauccCGCCGaccuugCCCGGCa -3' miRNA: 3'- -CAGGCAgCGGGcca---GUGGCa-----GGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 22876 | 0.66 | 0.641657 |
Target: 5'- -gCCGUC-CCgGGgcugGCCGgggCCCGGCc -3' miRNA: 3'- caGGCAGcGGgCCag--UGGCa--GGGCCG- -5' |
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5946 | 5' | -62.7 | NC_001806.1 | + | 93582 | 0.66 | 0.641657 |
Target: 5'- cGUUCGgcgGCCCGGgggCcCCGggaCCGGCa -3' miRNA: 3'- -CAGGCag-CGGGCCa--GuGGCag-GGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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