miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5946 5' -62.7 NC_001806.1 + 70731 0.67 0.612742
Target:  5'- uGUCCGUCGUguCCGGcauUCACg--CCCGGg -3'
miRNA:   3'- -CAGGCAGCG--GGCC---AGUGgcaGGGCCg -5'
5946 5' -62.7 NC_001806.1 + 2318 0.67 0.603122
Target:  5'- -cCCGcCGCCggccaGGUCcUCG-CCCGGCa -3'
miRNA:   3'- caGGCaGCGGg----CCAGuGGCaGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 144963 0.67 0.603122
Target:  5'- -cCCGUggcgGCCCGG-C-CCGgggcCCCGGCg -3'
miRNA:   3'- caGGCAg---CGGGCCaGuGGCa---GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 1227 0.67 0.603122
Target:  5'- gGUCUcacaagCGCCCcGcC-CCGUCCCGGCc -3'
miRNA:   3'- -CAGGca----GCGGGcCaGuGGCAGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 132597 0.67 0.59352
Target:  5'- uUCCGgguugGCCCacguUCACCGUgCCGGCc -3'
miRNA:   3'- cAGGCag---CGGGcc--AGUGGCAgGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 64958 0.67 0.59352
Target:  5'- cGUCgG-CGCCCGG--GCCGggggUCCCGGg -3'
miRNA:   3'- -CAGgCaGCGGGCCagUGGC----AGGGCCg -5'
5946 5' -62.7 NC_001806.1 + 88204 0.67 0.583943
Target:  5'- cUCCGggUGCCCGGcCACCGgaaaGGCc -3'
miRNA:   3'- cAGGCa-GCGGGCCaGUGGCagggCCG- -5'
5946 5' -62.7 NC_001806.1 + 24814 0.67 0.583943
Target:  5'- -gCCGgcgcCGCCCGGgauUCGCUGggcCUCGGCc -3'
miRNA:   3'- caGGCa---GCGGGCC---AGUGGCa--GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 131566 0.67 0.574398
Target:  5'- -cCCGUCa-CCGGUuuccgcgaccCACCGggCCCGGCc -3'
miRNA:   3'- caGGCAGcgGGCCA----------GUGGCa-GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 9296 0.67 0.574398
Target:  5'- cGUCCaccUCGCCggCGGUCGCCcagUUCGGCg -3'
miRNA:   3'- -CAGGc--AGCGG--GCCAGUGGca-GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 20090 0.67 0.574398
Target:  5'- -cCCGUCGUucguggCCGG-CGCCGUCUgcgGGCg -3'
miRNA:   3'- caGGCAGCG------GGCCaGUGGCAGGg--CCG- -5'
5946 5' -62.7 NC_001806.1 + 20165 0.67 0.564888
Target:  5'- -cCCGcCGCCCGGgccCGCC--CCCGGg -3'
miRNA:   3'- caGGCaGCGGGCCa--GUGGcaGGGCCg -5'
5946 5' -62.7 NC_001806.1 + 73050 0.67 0.564888
Target:  5'- -cCCGUCgggGCCgCGGUCcccgccuCCGUUCCGGa -3'
miRNA:   3'- caGGCAG---CGG-GCCAGu------GGCAGGGCCg -5'
5946 5' -62.7 NC_001806.1 + 148363 0.68 0.555421
Target:  5'- -aCCGUCGUCCaGGUCGucgucauccUCGUCCgUGGUg -3'
miRNA:   3'- caGGCAGCGGG-CCAGU---------GGCAGG-GCCG- -5'
5946 5' -62.7 NC_001806.1 + 83219 0.68 0.554476
Target:  5'- --aCGUCGCCgccgacgUGGUCACCGcCCCcucaagGGCc -3'
miRNA:   3'- cagGCAGCGG-------GCCAGUGGCaGGG------CCG- -5'
5946 5' -62.7 NC_001806.1 + 23267 0.68 0.553533
Target:  5'- cUCCGccgCGCCgCGGgaggggcgcaagCGCaagaGUCCCGGCc -3'
miRNA:   3'- cAGGCa--GCGG-GCCa-----------GUGg---CAGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 150939 0.68 0.546
Target:  5'- cUCCGcCaCCCGG-CGCCGgaaccgagCCCGGUc -3'
miRNA:   3'- cAGGCaGcGGGCCaGUGGCa-------GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 26679 0.68 0.546
Target:  5'- -cCCGgC-CCCGGccccCACCG-CCCGGCg -3'
miRNA:   3'- caGGCaGcGGGCCa---GUGGCaGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 144840 0.68 0.546
Target:  5'- gGUCCGggcccCGUCCGGaC-CCGcUCgCCGGCa -3'
miRNA:   3'- -CAGGCa----GCGGGCCaGuGGC-AG-GGCCG- -5'
5946 5' -62.7 NC_001806.1 + 68312 0.68 0.546
Target:  5'- uUCUGUUGUCgggaaCGGcCAUCGcCCCGGCa -3'
miRNA:   3'- cAGGCAGCGG-----GCCaGUGGCaGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.