miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5947 3' -58.5 NC_001806.1 + 72865 0.66 0.83371
Target:  5'- uCCU-GGAGAUGGGCGuCGUCC-CGGu -3'
miRNA:   3'- cGGAcCCUCUGCUCGU-GUAGGcGCCu -5'
5947 3' -58.5 NC_001806.1 + 39210 0.66 0.83371
Target:  5'- uCUUGGGGGcCGGGCcCcgCCGCaGAa -3'
miRNA:   3'- cGGACCCUCuGCUCGuGuaGGCGcCU- -5'
5947 3' -58.5 NC_001806.1 + 27058 0.66 0.831265
Target:  5'- uGCCUGGGGccCGAgGCcCGUgcccgggcccuggcCCGCGGAg -3'
miRNA:   3'- -CGGACCCUcuGCU-CGuGUA--------------GGCGCCU- -5'
5947 3' -58.5 NC_001806.1 + 2838 0.66 0.825501
Target:  5'- gGCgU-GGAGGgGGGCGCGggCGCGGGg -3'
miRNA:   3'- -CGgAcCCUCUgCUCGUGUagGCGCCU- -5'
5947 3' -58.5 NC_001806.1 + 115489 0.66 0.825501
Target:  5'- cGCCUGaucguGGAGACGGGU---UCgGCGGu -3'
miRNA:   3'- -CGGAC-----CCUCUGCUCGuguAGgCGCCu -5'
5947 3' -58.5 NC_001806.1 + 129722 0.66 0.825501
Target:  5'- gGCCacguucuuugGGGAGugGaAGCGCGccUUgGCGGGg -3'
miRNA:   3'- -CGGa---------CCCUCugC-UCGUGU--AGgCGCCU- -5'
5947 3' -58.5 NC_001806.1 + 145542 0.66 0.817123
Target:  5'- uGCCUGGGGGGgGGGa--GUgCGgGGGa -3'
miRNA:   3'- -CGGACCCUCUgCUCgugUAgGCgCCU- -5'
5947 3' -58.5 NC_001806.1 + 59152 0.66 0.808585
Target:  5'- gGCCgGGGucuCGGGUGCGggaCGCGGAg -3'
miRNA:   3'- -CGGaCCCucuGCUCGUGUag-GCGCCU- -5'
5947 3' -58.5 NC_001806.1 + 90985 0.66 0.808585
Target:  5'- aGCCaGGGuaagaccccgcgGGGCGGGCGCGaCgGCGGc -3'
miRNA:   3'- -CGGaCCC------------UCUGCUCGUGUaGgCGCCu -5'
5947 3' -58.5 NC_001806.1 + 33992 0.67 0.791056
Target:  5'- cGCCgGGGcagGGGCGGGgGCGUggGCGGGg -3'
miRNA:   3'- -CGGaCCC---UCUGCUCgUGUAggCGCCU- -5'
5947 3' -58.5 NC_001806.1 + 47740 0.67 0.791056
Target:  5'- aCCUGGGAGAaaugcuGCGCGccacgaUCGCGGAc -3'
miRNA:   3'- cGGACCCUCUgcu---CGUGUa-----GGCGCCU- -5'
5947 3' -58.5 NC_001806.1 + 41617 0.67 0.782082
Target:  5'- cGCCggGGGuGugGGGCccuGCuguUCCGUGGc -3'
miRNA:   3'- -CGGa-CCCuCugCUCG---UGu--AGGCGCCu -5'
5947 3' -58.5 NC_001806.1 + 43580 0.67 0.782082
Target:  5'- uCCgUGGG-GGCG-GCugAcaagUCCGCGGAu -3'
miRNA:   3'- cGG-ACCCuCUGCuCGugU----AGGCGCCU- -5'
5947 3' -58.5 NC_001806.1 + 48778 0.67 0.772979
Target:  5'- gGUCUGGGuugccGGCGuGUguguuagccGCGUCUGCGGGc -3'
miRNA:   3'- -CGGACCCu----CUGCuCG---------UGUAGGCGCCU- -5'
5947 3' -58.5 NC_001806.1 + 5657 0.67 0.763755
Target:  5'- uGCCaUGGGcggggcgcgaGGGCGGGUGgGUCCGCGc- -3'
miRNA:   3'- -CGG-ACCC----------UCUGCUCGUgUAGGCGCcu -5'
5947 3' -58.5 NC_001806.1 + 2759 0.67 0.763755
Target:  5'- gGCCacgGGGcgcGGGCGGGCcuGCG-CCGCGGc -3'
miRNA:   3'- -CGGa--CCC---UCUGCUCG--UGUaGGCGCCu -5'
5947 3' -58.5 NC_001806.1 + 16162 0.67 0.763755
Target:  5'- uGCC-GGGAGACcgcuGCG-AUCUGCGGGc -3'
miRNA:   3'- -CGGaCCCUCUGcu--CGUgUAGGCGCCU- -5'
5947 3' -58.5 NC_001806.1 + 147741 0.67 0.763755
Target:  5'- gGCCgcgcGGGGGcgcGCGGGUcccgacGCggCCGCGGAc -3'
miRNA:   3'- -CGGa---CCCUC---UGCUCG------UGuaGGCGCCU- -5'
5947 3' -58.5 NC_001806.1 + 107038 0.67 0.75442
Target:  5'- cGCCcgcgGGGccGCGGGCugugCCGCGGAu -3'
miRNA:   3'- -CGGa---CCCucUGCUCGuguaGGCGCCU- -5'
5947 3' -58.5 NC_001806.1 + 109555 0.67 0.744981
Target:  5'- cGCCUGGGccaGGGCGAaCACGUauGgGGAc -3'
miRNA:   3'- -CGGACCC---UCUGCUcGUGUAggCgCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.