miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5947 5' -53.5 NC_001806.1 + 64275 0.66 0.976629
Target:  5'- gCCCCCGCucgaccaGCGUGUGCGgugugCUGUGGa -3'
miRNA:   3'- -GGGGGUGcc-----UGUACAUGUa----GACGUCc -5'
5947 5' -53.5 NC_001806.1 + 43536 0.66 0.976383
Target:  5'- gCCUgGCGGACAcgUGUAuggccacCAUcCUGCAGa -3'
miRNA:   3'- gGGGgUGCCUGU--ACAU-------GUA-GACGUCc -5'
5947 5' -53.5 NC_001806.1 + 10345 0.66 0.974079
Target:  5'- aCCCCACGcACAUGUGagaCUuCGGGg -3'
miRNA:   3'- gGGGGUGCcUGUACAUguaGAcGUCC- -5'
5947 5' -53.5 NC_001806.1 + 33640 0.66 0.971332
Target:  5'- aCCCaCACGGGCGggggggggGUGucgcgggcCGUCUGCuGGc -3'
miRNA:   3'- gGGG-GUGCCUGUa-------CAU--------GUAGACGuCC- -5'
5947 5' -53.5 NC_001806.1 + 119387 0.66 0.971332
Target:  5'- -gCCCA-GGACGUGUcCAUCgcaCAGGa -3'
miRNA:   3'- ggGGGUgCCUGUACAuGUAGac-GUCC- -5'
5947 5' -53.5 NC_001806.1 + 29156 0.66 0.971332
Target:  5'- cCCCCCGCGaggaaGACcccgGCAgUUGCGGGg -3'
miRNA:   3'- -GGGGGUGC-----CUGuacaUGUaGACGUCC- -5'
5947 5' -53.5 NC_001806.1 + 103688 0.66 0.971046
Target:  5'- cCCCCCGCccuccguGGAgGUGgggguUugGUCgGCGGGu -3'
miRNA:   3'- -GGGGGUG-------CCUgUAC-----AugUAGaCGUCC- -5'
5947 5' -53.5 NC_001806.1 + 148439 0.66 0.968382
Target:  5'- cCCCCCAgGGuCAgGUACc---GCGGGg -3'
miRNA:   3'- -GGGGGUgCCuGUaCAUGuagaCGUCC- -5'
5947 5' -53.5 NC_001806.1 + 59650 0.66 0.967456
Target:  5'- aCCCCCAuugccguggaccugUGGAacguCAUGUACAcgUUGguGGu -3'
miRNA:   3'- -GGGGGU--------------GCCU----GUACAUGUa-GACguCC- -5'
5947 5' -53.5 NC_001806.1 + 2830 0.67 0.961847
Target:  5'- gCCCCGgGGGCGUGgagggggGCG-CgggcGCGGGg -3'
miRNA:   3'- gGGGGUgCCUGUACa------UGUaGa---CGUCC- -5'
5947 5' -53.5 NC_001806.1 + 64542 0.67 0.961847
Target:  5'- aCUCCCugagauaauaGGGCAUGUauGCGUUcgGCGGGa -3'
miRNA:   3'- -GGGGGug--------CCUGUACA--UGUAGa-CGUCC- -5'
5947 5' -53.5 NC_001806.1 + 130021 0.67 0.961847
Target:  5'- gUCCCugGGACggGUGCGcacccUCcGCAaGGg -3'
miRNA:   3'- gGGGGugCCUGuaCAUGU-----AGaCGU-CC- -5'
5947 5' -53.5 NC_001806.1 + 76841 0.67 0.958251
Target:  5'- cCUCCUACGcGACAgggcGcGCGcCUGCAGGc -3'
miRNA:   3'- -GGGGGUGC-CUGUa---CaUGUaGACGUCC- -5'
5947 5' -53.5 NC_001806.1 + 115229 0.67 0.958251
Target:  5'- aCCCCCGgGGACGcgccgccgGggGCGUUUacGCGGGg -3'
miRNA:   3'- -GGGGGUgCCUGUa-------Ca-UGUAGA--CGUCC- -5'
5947 5' -53.5 NC_001806.1 + 55965 0.67 0.958251
Target:  5'- cCUCCaCACGGACcaccggauggggGUGUGCGUUcgaUGCGGc -3'
miRNA:   3'- -GGGG-GUGCCUG------------UACAUGUAG---ACGUCc -5'
5947 5' -53.5 NC_001806.1 + 22300 0.67 0.958251
Target:  5'- gUCCCCGgGGACGUG-GCG-CUGgacCAGGc -3'
miRNA:   3'- -GGGGGUgCCUGUACaUGUaGAC---GUCC- -5'
5947 5' -53.5 NC_001806.1 + 72259 0.67 0.94996
Target:  5'- aCCCCCGCGuuCAUcgccaaaGUGCGg--GCGGGg -3'
miRNA:   3'- -GGGGGUGCcuGUA-------CAUGUagaCGUCC- -5'
5947 5' -53.5 NC_001806.1 + 7457 0.67 0.946093
Target:  5'- cCCCCCGCGaACcacGUACggCUcGCGGGu -3'
miRNA:   3'- -GGGGGUGCcUGua-CAUGuaGA-CGUCC- -5'
5947 5' -53.5 NC_001806.1 + 133406 0.67 0.946093
Target:  5'- cUCUCCGCGGGCccgcGUACAccacggCgGCAGGg -3'
miRNA:   3'- -GGGGGUGCCUGua--CAUGUa-----GaCGUCC- -5'
5947 5' -53.5 NC_001806.1 + 93042 0.67 0.946093
Target:  5'- gCCCCAUGGuCGUGUugggguugaGCAUCaGCAa- -3'
miRNA:   3'- gGGGGUGCCuGUACA---------UGUAGaCGUcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.