miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5948 3' -58.7 NC_001806.1 + 29957 0.66 0.840918
Target:  5'- cGCGA-GcCGCgGCGCcGCGGGGgGCg -3'
miRNA:   3'- -UGCUgCaGCGgCGCGaUGUCCUgCGg -5'
5948 3' -58.7 NC_001806.1 + 2413 0.66 0.840918
Target:  5'- uGCGGCGcagcggGCCcgagGCGC-GCAGGGgGCCa -3'
miRNA:   3'- -UGCUGCag----CGG----CGCGaUGUCCUgCGG- -5'
5948 3' -58.7 NC_001806.1 + 136798 0.66 0.840918
Target:  5'- -gGugGUCGCCuCGCUggACcGGACGaCg -3'
miRNA:   3'- ugCugCAGCGGcGCGA--UGuCCUGCgG- -5'
5948 3' -58.7 NC_001806.1 + 86002 0.66 0.840918
Target:  5'- gACGGCGUCuCCcggggGCGCUuggccggggaggGCAGGGcCGCg -3'
miRNA:   3'- -UGCUGCAGcGG-----CGCGA------------UGUCCU-GCGg -5'
5948 3' -58.7 NC_001806.1 + 74478 0.66 0.840918
Target:  5'- -aGGCG-CGCCGCaGCU-CGGGucugGCCg -3'
miRNA:   3'- ugCUGCaGCGGCG-CGAuGUCCug--CGG- -5'
5948 3' -58.7 NC_001806.1 + 44657 0.66 0.836145
Target:  5'- uCGGCGUcgCGCCGguagggccguagucaCGCUugGGGccccgaGCGCCc -3'
miRNA:   3'- uGCUGCA--GCGGC---------------GCGAugUCC------UGCGG- -5'
5948 3' -58.7 NC_001806.1 + 24662 0.66 0.832928
Target:  5'- uACGugG-CGCUgggGCGCgagGCGGuGcGCGCCg -3'
miRNA:   3'- -UGCugCaGCGG---CGCGa--UGUC-C-UGCGG- -5'
5948 3' -58.7 NC_001806.1 + 70328 0.66 0.832928
Target:  5'- uACGcCcUgGCCGCccgggggguGCUGCAGGAccuCGCCg -3'
miRNA:   3'- -UGCuGcAgCGGCG---------CGAUGUCCU---GCGG- -5'
5948 3' -58.7 NC_001806.1 + 121140 0.66 0.832928
Target:  5'- cUGACG-CGCCccaagGCGCUGC-GGuuGCCc -3'
miRNA:   3'- uGCUGCaGCGG-----CGCGAUGuCCugCGG- -5'
5948 3' -58.7 NC_001806.1 + 132151 0.66 0.832928
Target:  5'- gGCGcGCGUUGCCgagcaucccgacGCGCggcugGCGuGGGCGCg -3'
miRNA:   3'- -UGC-UGCAGCGG------------CGCGa----UGU-CCUGCGg -5'
5948 3' -58.7 NC_001806.1 + 22616 0.66 0.832928
Target:  5'- cCGcCGUCGCCGcCGCcGCAccGGGCGa- -3'
miRNA:   3'- uGCuGCAGCGGC-GCGaUGU--CCUGCgg -5'
5948 3' -58.7 NC_001806.1 + 64867 0.66 0.832928
Target:  5'- cGCG-CGUC-CCGgGCcacgGCGGGAUcgGCCg -3'
miRNA:   3'- -UGCuGCAGcGGCgCGa---UGUCCUG--CGG- -5'
5948 3' -58.7 NC_001806.1 + 84963 0.66 0.832928
Target:  5'- cACGAg--CGCCaGCGCUAuCGGGGCcuuuucGCCg -3'
miRNA:   3'- -UGCUgcaGCGG-CGCGAU-GUCCUG------CGG- -5'
5948 3' -58.7 NC_001806.1 + 91018 0.66 0.832928
Target:  5'- gGCGGCGgcaagggCGCgGCGg-GCGGGuucgaacaGCGCCu -3'
miRNA:   3'- -UGCUGCa------GCGgCGCgaUGUCC--------UGCGG- -5'
5948 3' -58.7 NC_001806.1 + 95074 0.66 0.832928
Target:  5'- gGCGGCGggcggagcauuUCGaUCGCGCguuCGGGA-GCCa -3'
miRNA:   3'- -UGCUGC-----------AGC-GGCGCGau-GUCCUgCGG- -5'
5948 3' -58.7 NC_001806.1 + 1377 0.66 0.82805
Target:  5'- cACGGCcccCGCCGCcgccagcacggugccGCUGCGGcccGugGCCg -3'
miRNA:   3'- -UGCUGca-GCGGCG---------------CGAUGUC---CugCGG- -5'
5948 3' -58.7 NC_001806.1 + 70827 0.66 0.82805
Target:  5'- gGCGGCGUCugucgGCCugcuaucaagccgcgGCGCggccGCGGGAC-CCg -3'
miRNA:   3'- -UGCUGCAG-----CGG---------------CGCGa---UGUCCUGcGG- -5'
5948 3' -58.7 NC_001806.1 + 48789 0.66 0.824765
Target:  5'- cCGGCGUguguguuaGCCGCGuCUGCGGGcCuGUCg -3'
miRNA:   3'- uGCUGCAg-------CGGCGC-GAUGUCCuG-CGG- -5'
5948 3' -58.7 NC_001806.1 + 1679 0.66 0.824765
Target:  5'- cCGGCG-CGCCGgGCgcCAuGGCGUCg -3'
miRNA:   3'- uGCUGCaGCGGCgCGauGUcCUGCGG- -5'
5948 3' -58.7 NC_001806.1 + 106545 0.66 0.824765
Target:  5'- uGCGAUGcCGCgcuggugcgcgCGCGCUACGGG-CGg- -3'
miRNA:   3'- -UGCUGCaGCG-----------GCGCGAUGUCCuGCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.