miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5948 3' -58.7 NC_001806.1 + 367 0.68 0.696713
Target:  5'- uGCG-CG-CGCgCGCGCccGCGGGGgGCCc -3'
miRNA:   3'- -UGCuGCaGCG-GCGCGa-UGUCCUgCGG- -5'
5948 3' -58.7 NC_001806.1 + 1377 0.66 0.82805
Target:  5'- cACGGCcccCGCCGCcgccagcacggugccGCUGCGGcccGugGCCg -3'
miRNA:   3'- -UGCUGca-GCGGCG---------------CGAUGUC---CugCGG- -5'
5948 3' -58.7 NC_001806.1 + 1440 0.66 0.824765
Target:  5'- -gGGCGgCGCCG-GCgGCAGGGCccccggGCCg -3'
miRNA:   3'- ugCUGCaGCGGCgCGaUGUCCUG------CGG- -5'
5948 3' -58.7 NC_001806.1 + 1500 0.8 0.168824
Target:  5'- gGCGuCGUCGUCGgGCUccaGCAGGGCGCg -3'
miRNA:   3'- -UGCuGCAGCGGCgCGA---UGUCCUGCGg -5'
5948 3' -58.7 NC_001806.1 + 1679 0.66 0.824765
Target:  5'- cCGGCG-CGCCGgGCgcCAuGGCGUCg -3'
miRNA:   3'- uGCUGCaGCGGCgCGauGUcCUGCGG- -5'
5948 3' -58.7 NC_001806.1 + 1817 0.72 0.473165
Target:  5'- aGCGcACGUUGCCGcCGCggcACAGG-CGCa -3'
miRNA:   3'- -UGC-UGCAGCGGC-GCGa--UGUCCuGCGg -5'
5948 3' -58.7 NC_001806.1 + 1846 0.71 0.529361
Target:  5'- aGCGGCGgcgCGUCGgGgUACAGGcGCGCg -3'
miRNA:   3'- -UGCUGCa--GCGGCgCgAUGUCC-UGCGg -5'
5948 3' -58.7 NC_001806.1 + 2413 0.66 0.840918
Target:  5'- uGCGGCGcagcggGCCcgagGCGC-GCAGGGgGCCa -3'
miRNA:   3'- -UGCUGCag----CGG----CGCGaUGUCCUgCGG- -5'
5948 3' -58.7 NC_001806.1 + 2490 0.66 0.807951
Target:  5'- uCGuCGUCGCCGcCGCcGCAcgcggccuGGGCGgCg -3'
miRNA:   3'- uGCuGCAGCGGC-GCGaUGU--------CCUGCgG- -5'
5948 3' -58.7 NC_001806.1 + 2675 0.67 0.790537
Target:  5'- -gGGCGcCGCCGUGUgGCuGGGCcCCg -3'
miRNA:   3'- ugCUGCaGCGGCGCGaUGuCCUGcGG- -5'
5948 3' -58.7 NC_001806.1 + 2772 0.74 0.394997
Target:  5'- -gGGCGggccugCGCCGCgGCggccCGGGGCGCCg -3'
miRNA:   3'- ugCUGCa-----GCGGCG-CGau--GUCCUGCGG- -5'
5948 3' -58.7 NC_001806.1 + 3022 0.69 0.644379
Target:  5'- gGCGGCGUcCGgUGCGCUggccgccgccgccaGCAGGGgGCg -3'
miRNA:   3'- -UGCUGCA-GCgGCGCGA--------------UGUCCUgCGg -5'
5948 3' -58.7 NC_001806.1 + 3094 0.67 0.754157
Target:  5'- gGCGGCGgcgGCCGCggaGCUcgGCAGG-CGCg -3'
miRNA:   3'- -UGCUGCag-CGGCG---CGA--UGUCCuGCGg -5'
5948 3' -58.7 NC_001806.1 + 3245 0.66 0.814752
Target:  5'- aGCG-CGUCGCgcacgaaccgcagcuCGCGCagccacgcgcgcagGCGGGGCGCg -3'
miRNA:   3'- -UGCuGCAGCG---------------GCGCGa-------------UGUCCUGCGg -5'
5948 3' -58.7 NC_001806.1 + 3488 0.69 0.677068
Target:  5'- cCGGCGUCGUCGUcggcgucgGCgugGCGGGcgGCGUCg -3'
miRNA:   3'- uGCUGCAGCGGCG--------CGa--UGUCC--UGCGG- -5'
5948 3' -58.7 NC_001806.1 + 3799 0.7 0.617546
Target:  5'- cACGGCGgcCGCCGCGUgcgcCAGGccccaGCCg -3'
miRNA:   3'- -UGCUGCa-GCGGCGCGau--GUCCug---CGG- -5'
5948 3' -58.7 NC_001806.1 + 4044 0.75 0.315738
Target:  5'- cGCGGCGUCGCCcagcucggGCGCccacacggccgcCGGGGCGCCc -3'
miRNA:   3'- -UGCUGCAGCGG--------CGCGau----------GUCCUGCGG- -5'
5948 3' -58.7 NC_001806.1 + 4322 0.67 0.790537
Target:  5'- cGCGGcCGgccacCGCCGCGCgggccCGGcGGCGCUc -3'
miRNA:   3'- -UGCU-GCa----GCGGCGCGau---GUC-CUGCGG- -5'
5948 3' -58.7 NC_001806.1 + 4444 0.72 0.473165
Target:  5'- gGCGGCGUcCGCCcggGgGCUGCcGG-CGCCg -3'
miRNA:   3'- -UGCUGCA-GCGG---CgCGAUGuCCuGCGG- -5'
5948 3' -58.7 NC_001806.1 + 4646 0.67 0.744788
Target:  5'- gACGACGUCuCCGCGgCggcugggccgGCGGG-CGCg -3'
miRNA:   3'- -UGCUGCAGcGGCGC-Ga---------UGUCCuGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.