miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5948 5' -58 NC_001806.1 + 100273 0.78 0.220813
Target:  5'- cGGACCCCGCcGCAGCCGGgaaACCAa-- -3'
miRNA:   3'- cCCUGGGGCGaUGUUGGCC---UGGUgua -5'
5948 5' -58 NC_001806.1 + 3189 0.77 0.24888
Target:  5'- cGGcGGCCUCGCUGCcGCCGG-CCACGc -3'
miRNA:   3'- -CC-CUGGGGCGAUGuUGGCCuGGUGUa -5'
5948 5' -58 NC_001806.1 + 89897 0.77 0.273405
Target:  5'- aGGGACCCCGCguu-GCCGG-CCGCc- -3'
miRNA:   3'- -CCCUGGGGCGauguUGGCCuGGUGua -5'
5948 5' -58 NC_001806.1 + 4189 0.76 0.306738
Target:  5'- gGGGGCCCgGC----GCCGGGCCACGg -3'
miRNA:   3'- -CCCUGGGgCGauguUGGCCUGGUGUa -5'
5948 5' -58 NC_001806.1 + 57053 0.75 0.343093
Target:  5'- cGGGGCCCCcgGCUGCGuGCCGGGcuccccgagacuCCACAg -3'
miRNA:   3'- -CCCUGGGG--CGAUGU-UGGCCU------------GGUGUa -5'
5948 5' -58 NC_001806.1 + 32986 0.75 0.35848
Target:  5'- cGGGGCCCCG----GGCCGGGCCGCc- -3'
miRNA:   3'- -CCCUGGGGCgaugUUGGCCUGGUGua -5'
5948 5' -58 NC_001806.1 + 21534 0.75 0.35848
Target:  5'- gGGaGGCCCCGCUACGcggcgcguauCCGGACCcCAc -3'
miRNA:   3'- -CC-CUGGGGCGAUGUu---------GGCCUGGuGUa -5'
5948 5' -58 NC_001806.1 + 91350 0.75 0.35848
Target:  5'- cGGGACCCaCGUgGCGGCCaacccacagguGGACCGCGa -3'
miRNA:   3'- -CCCUGGG-GCGaUGUUGG-----------CCUGGUGUa -5'
5948 5' -58 NC_001806.1 + 144602 0.74 0.407468
Target:  5'- cGGGCCCCcCUGCAGCCGGggcgGCCAa-- -3'
miRNA:   3'- cCCUGGGGcGAUGUUGGCC----UGGUgua -5'
5948 5' -58 NC_001806.1 + 51698 0.73 0.416031
Target:  5'- aGGACCCCGUggGCGACUGcGACCcCAg -3'
miRNA:   3'- cCCUGGGGCGa-UGUUGGC-CUGGuGUa -5'
5948 5' -58 NC_001806.1 + 2927 0.73 0.424703
Target:  5'- cGGGCCgCCGCcuccggGCGGCCGGGCCGgGc -3'
miRNA:   3'- cCCUGG-GGCGa-----UGUUGGCCUGGUgUa -5'
5948 5' -58 NC_001806.1 + 146646 0.73 0.433483
Target:  5'- cGGGucgacGCCCC-CUGCuccCCGGACCACGg -3'
miRNA:   3'- -CCC-----UGGGGcGAUGuu-GGCCUGGUGUa -5'
5948 5' -58 NC_001806.1 + 93595 0.73 0.433483
Target:  5'- gGGGGCCCCGggaccgGCAuuuGCCGG-CCGCAa -3'
miRNA:   3'- -CCCUGGGGCga----UGU---UGGCCuGGUGUa -5'
5948 5' -58 NC_001806.1 + 59223 0.73 0.451353
Target:  5'- gGGGACCCaa--GCAACCGGACCGuCGc -3'
miRNA:   3'- -CCCUGGGgcgaUGUUGGCCUGGU-GUa -5'
5948 5' -58 NC_001806.1 + 22934 0.73 0.451353
Target:  5'- cGGGCCCCGCUuccCcGCCGcGCCGCAc -3'
miRNA:   3'- cCCUGGGGCGAu--GuUGGCcUGGUGUa -5'
5948 5' -58 NC_001806.1 + 114083 0.73 0.457703
Target:  5'- cGGGGCCgCUGCUGC-ACCGcggggguucgcuucGACCGCGUa -3'
miRNA:   3'- -CCCUGG-GGCGAUGuUGGC--------------CUGGUGUA- -5'
5948 5' -58 NC_001806.1 + 65706 0.72 0.501506
Target:  5'- cGGGGCCCgCGCUucgacgggagaggauGCGGCUGGGCgGCu- -3'
miRNA:   3'- -CCCUGGG-GCGA---------------UGUUGGCCUGgUGua -5'
5948 5' -58 NC_001806.1 + 30209 0.72 0.516839
Target:  5'- cGGGACCCgCGCgcccccgcGCGGCCGuGGCCcCGUg -3'
miRNA:   3'- -CCCUGGG-GCGa-------UGUUGGC-CUGGuGUA- -5'
5948 5' -58 NC_001806.1 + 125939 0.72 0.516839
Target:  5'- uGGGCCCUGCUcCGGCgGGGCCuCAc -3'
miRNA:   3'- cCCUGGGGCGAuGUUGgCCUGGuGUa -5'
5948 5' -58 NC_001806.1 + 24632 0.71 0.526516
Target:  5'- uGGGGCCugggcgcgCCGCUGCGGCCcGugUACGUg -3'
miRNA:   3'- -CCCUGG--------GGCGAUGUUGGcCugGUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.